Variant report
| Variant | rs57879648 |
|---|---|
| Chromosome Location | chr4:19736231-19736232 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:19727412..19729321-chr4:19735954..19738022,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs16868689 | 1.00[AMR][1000 genomes] |
| rs56672156 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57626495 | 1.00[AMR][1000 genomes] |
| rs58108305 | 1.00[AMR][1000 genomes] |
| rs59483698 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73092817 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73097638 | 1.00[AMR][1000 genomes] |
| rs73097664 | 1.00[AMR][1000 genomes] |
| rs73101137 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73101146 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73101175 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73101201 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73103103 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73103109 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73103120 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73103123 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73109081 | 1.00[AMR][1000 genomes] |
| rs73111003 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73111007 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv878733 | chr4:19335464-19928602 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv829873 | chr4:19582263-19742515 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv829874 | chr4:19635213-19781102 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv529290 | chr4:19658583-20173839 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | esv3467023 | chr4:19734943-19739840 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv3467024 | chr4:19734943-19739840 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:19732400-19736400 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
