Variant report

Variant	rs73097638
Chromosome Location	chr4:19844939-19844940
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16868689	1.00[AMR][1000 genomes]
rs56672156	1.00[AMR][1000 genomes]
rs57626495	1.00[AMR][1000 genomes]
rs57879648	1.00[AMR][1000 genomes]
rs58108305	1.00[AMR][1000 genomes]
rs59483698	1.00[AMR][1000 genomes]
rs73092817	1.00[AMR][1000 genomes]
rs73097664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73099586	1.00[AMR][1000 genomes]
rs73099591	1.00[AMR][1000 genomes]
rs73099597	1.00[AMR][1000 genomes]
rs73101201	1.00[AMR][1000 genomes]
rs73103103	1.00[AMR][1000 genomes]
rs73103109	1.00[AMR][1000 genomes]
rs73103120	1.00[AMR][1000 genomes]
rs73103123	1.00[AMR][1000 genomes]
rs73109081	1.00[AMR][1000 genomes]
rs73111003	1.00[AMR][1000 genomes]
rs73111007	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1009938	chr4:19787648-19848997	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1001635	chr4:19787648-19854388	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv878735	chr4:19810878-19933069	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1830614	chr4:19840731-19875509	Weak transcription Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19843400-19845400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:19843600-19845000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:19843800-19845200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:19844800-19845000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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