Variant report

Variant	rs73101201
Chromosome Location	chr4:19653139-19653140
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16868689	1.00[AMR][1000 genomes]
rs56672156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57626495	1.00[AMR][1000 genomes]
rs57879648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58108305	1.00[AMR][1000 genomes]
rs59483698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097638	1.00[AMR][1000 genomes]
rs73101137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73103103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73103109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73103120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73103123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73109081	1.00[AMR][1000 genomes]
rs73111003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73111007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1001485	chr4:19585423-19655316	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1013517	chr4:19611067-19655316	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19652800-19653200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:19652800-19653200	Active TSS	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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