The 2.0 version of rSNPBase

Variant report

Variant rs57885631
Chromosome Location chr1:63289573-63289574
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:63250800-63319000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:63251000-63296000 Weak transcription Fetal Thymus thymus
3 chr1:63251000-63317800 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr1:63251000-63327400 Weak transcription Fetal Stomach stomach
5 chr1:63251200-63327400 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr1:63257400-63293400 Weak transcription Brain Anterior Caudate brain
7 chr1:63261600-63326400 Weak transcription Placenta Placenta
8 chr1:63262800-63293000 Weak transcription Brain Substantia Nigra brain
9 chr1:63267200-63327000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:63267200-63327400 Weak transcription Colon Smooth Muscle Colon
11 chr1:63268400-63297000 Weak transcription Brain Hippocampus Middle brain
12 chr1:63268600-63319600 Weak transcription Liver Liver
13 chr1:63268800-63317600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr1:63269200-63317400 Weak transcription Dnd41 blood
15 chr1:63269600-63309600 Weak transcription Brain Angular Gyrus brain
16 chr1:63270400-63331400 Weak transcription Primary T regulatory cells fromperipheralblood blood
17 chr1:63271400-63324400 Weak transcription Pancreas Pancrea
18 chr1:63271600-63326800 Weak transcription Aorta Aorta
19 chr1:63271600-63327400 Weak transcription Thymus Thymus
20 chr1:63271800-63324000 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr1:63273000-63311600 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr1:63273200-63291000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr1:63273200-63299000 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr1:63273200-63306400 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr1:63273200-63313800 Weak transcription HSMM muscle
26 chr1:63273600-63322400 Weak transcription Ovary ovary
27 chr1:63273800-63329000 Weak transcription Brain Cingulate Gyrus brain
28 chr1:63274000-63292600 Weak transcription Primary T cells from cord blood blood
29 chr1:63274600-63294200 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr1:63275000-63321400 Weak transcription Fetal Intestine Small intestine
31 chr1:63275400-63293000 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr1:63276000-63322800 Weak transcription H1 Cell Line embryonic stem cell
33 chr1:63276400-63295200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr1:63276400-63311600 Weak transcription Primary hematopoietic stem cells blood
35 chr1:63276400-63312200 Weak transcription iPS-20b Cell Line embryonic stem cell
36 chr1:63276400-63322600 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr1:63276600-63299800 Weak transcription HUES6 Cell Line embryonic stem cell
38 chr1:63276600-63323200 Weak transcription Primary T cells fromperipheralblood blood
39 chr1:63276600-63324400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr1:63276800-63322000 Weak transcription Fetal Muscle Trunk muscle
41 chr1:63276800-63331400 Weak transcription Fetal Lung lung
42 chr1:63277000-63294600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr1:63277600-63293000 Weak transcription Primary B cells from peripheral blood blood
44 chr1:63277600-63298000 Weak transcription Adipose Nuclei Adipose
45 chr1:63277600-63320600 Weak transcription Right Ventricle heart
46 chr1:63277600-63327600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr1:63277800-63299400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr1:63278000-63299800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:63278200-63306200 Weak transcription HUES64 Cell Line embryonic stem cell
50 chr1:63278200-63325000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015