Variant report

Variant	rs57890101
Chromosome Location	chr2:178662033-178662034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57019461	1.00[AMR][1000 genomes]
rs57352786	1.00[AMR][1000 genomes]
rs57715307	1.00[AMR][1000 genomes]
rs58779934	1.00[AMR][1000 genomes]
rs60586489	1.00[AMR][1000 genomes]
rs61339042	1.00[AMR][1000 genomes]
rs61448024	1.00[AMR][1000 genomes]
rs61541689	1.00[AMR][1000 genomes]
rs6717171	1.00[AMR][1000 genomes]
rs7578601	1.00[AMR][1000 genomes]
rs7586771	1.00[AMR][1000 genomes]
rs9679242	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178660400-178663200	Enhancers	Fetal Heart	heart
2	chr2:178661200-178663000	Enhancers	Psoas Muscle	Psoas
3	chr2:178661200-178663200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr2:178661200-178663200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:178661200-178663200	Enhancers	Adipose Nuclei	Adipose
6	chr2:178661400-178663200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr2:178661600-178662600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:178661600-178662600	Weak transcription	Left Ventricle	heart
9	chr2:178661600-178663200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:178661600-178663400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:178661800-178663000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:178661800-178663000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:178661800-178663000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr2:178661800-178663200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:178661800-178663200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr2:178662000-178662200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:178662000-178662400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:178662000-178663200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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