Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178681561..178684546-chr2:178836153..178838637,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16823484	0.85[AFR][1000 genomes]
rs16865818	0.88[AFR][1000 genomes]
rs16865821	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs16865846	0.80[YRI][hapmap]
rs16865951	0.89[YRI][hapmap]
rs57019461	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57352786	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57715307	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57890101	1.00[AMR][1000 genomes]
rs58779934	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60586489	1.00[AMR][1000 genomes]
rs61339042	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61448024	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61541689	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6708449	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6717171	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6733229	0.81[AFR][1000 genomes]
rs6750238	1.00[YRI][hapmap]
rs7586771	1.00[AMR][1000 genomes]
rs9679242	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv19617	chr2:178678786-178684838	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178683400-178684400	Enhancers	Colon Smooth Muscle	Colon

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