Variant report

Variant	rs9679242
Chromosome Location	chr2:178590657-178590658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178088476..178090203-chr2:178588008..178591077,3	K562	blood:
2	chr2:178589552..178591221-chr2:178591349..178593643,3	K562	blood:
3	chr2:178197665..178199290-chr2:178590307..178592698,2	K562	blood:
4	chr2:178479040..178481545-chr2:178589525..178591056,2	K562	blood:
5	chr2:178590388..178593361-chr2:178606001..178607897,2	K562	blood:
6	chr2:178148139..178151111-chr2:178587913..178590676,3	K562	blood:
7	chr2:178075122..178077953-chr2:178590513..178592253,2	K562	blood:
8	chr2:178589973..178591611-chr2:178597442..178599800,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57019461	1.00[AMR][1000 genomes]
rs57890101	1.00[AMR][1000 genomes]
rs58779934	1.00[AMR][1000 genomes]
rs60586489	1.00[AMR][1000 genomes]
rs61339042	1.00[AMR][1000 genomes]
rs6717171	1.00[AMR][1000 genomes]
rs7578601	1.00[AMR][1000 genomes]
rs7586771	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178587800-178594000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:178589200-178593000	Enhancers	Ovary	ovary
3	chr2:178589400-178591600	Weak transcription	Fetal Brain Male	brain
4	chr2:178589400-178594200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:178589400-178595600	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:178589600-178590800	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:178589600-178591600	Weak transcription	Stomach Mucosa	stomach
8	chr2:178589600-178591800	Weak transcription	Fetal Intestine Small	intestine
9	chr2:178589600-178593000	Weak transcription	Liver	Liver
10	chr2:178589800-178591000	Weak transcription	Fetal Lung	lung
11	chr2:178589800-178592200	Weak transcription	Fetal Kidney	kidney
12	chr2:178590600-178593800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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