Variant report

Variant	rs6733229
Chromosome Location	chr2:178746725-178746726
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178739623..178741157-chr2:178746550..178748805,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1347440	0.85[AMR][1000 genomes]
rs1527291	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16823484	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865786	0.83[EUR][1000 genomes]
rs16865818	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16865821	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16865846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865903	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865998	0.85[AMR][1000 genomes]
rs16865999	0.85[AMR][1000 genomes]
rs16866003	0.85[AMR][1000 genomes]
rs16866043	0.85[AMR][1000 genomes]
rs16866058	0.85[AMR][1000 genomes]
rs3770053	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3821011	0.83[EUR][1000 genomes]
rs41357848	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57019461	0.84[AFR][1000 genomes]
rs57352786	0.96[AFR][1000 genomes]
rs57715307	0.80[AFR][1000 genomes]
rs58297855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58779934	0.88[AFR][1000 genomes]
rs61339042	0.96[AFR][1000 genomes]
rs61448024	0.96[AFR][1000 genomes]
rs61541689	0.80[AFR][1000 genomes]
rs6708449	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6717171	0.96[AFR][1000 genomes]
rs6750238	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7578601	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178741000-178759200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:178741600-178748000	Enhancers	Liver	Liver
3	chr2:178745200-178750000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:178746000-178759200	Weak transcription	Fetal Intestine Small	intestine
5	chr2:178746200-178747000	Enhancers	Psoas Muscle	Psoas
6	chr2:178746200-178747000	Enhancers	Skeletal Muscle Male	skeletal muscle

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