Variant report

Variant	rs16866058
Chromosome Location	chr2:178943809-178943810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178935372..178939354-chr2:178942023..178945915,4	K562	blood:

Variant related genes	Relation type
ENSG00000128655	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10170914	1.00[CEU][hapmap]
rs10174910	1.00[JPT][hapmap]
rs10205083	1.00[JPT][hapmap]
rs10497475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11894754	1.00[JPT][hapmap]
rs12996084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13022619	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13412181	1.00[CEU][hapmap]
rs1347440	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1527291	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs168009	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16823484	0.85[AMR][1000 genomes]
rs16865903	0.85[AMR][1000 genomes]
rs16865998	1.00[AMR][1000 genomes]
rs16865999	1.00[AMR][1000 genomes]
rs16866003	1.00[AMR][1000 genomes]
rs16866031	0.85[AMR][1000 genomes]
rs16866034	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs16866043	1.00[AMR][1000 genomes]
rs16866088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16866108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16866151	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16866156	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16866169	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1898012	1.00[CEU][hapmap]
rs2015183	1.00[CEU][hapmap]
rs66558684	0.86[ASN][1000 genomes]
rs6708449	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs6726222	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6733229	0.85[AMR][1000 genomes]
rs6750238	1.00[CEU][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv583739	chr2:178942302-178993562	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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