Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1347440	1.00[AMR][1000 genomes]
rs1527291	1.00[AMR][1000 genomes]
rs16823484	0.85[AMR][1000 genomes]
rs16865818	0.85[AMR][1000 genomes]
rs16865821	0.85[AMR][1000 genomes]
rs16865903	0.85[AMR][1000 genomes]
rs16865998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866031	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866034	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866043	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866058	1.00[AMR][1000 genomes]
rs16866108	1.00[AMR][1000 genomes]
rs2015183	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3770053	1.00[AMR][1000 genomes]
rs3821011	0.83[AMR][1000 genomes]
rs6708449	0.85[AMR][1000 genomes]
rs6726477	0.88[ASN][1000 genomes]
rs6733229	0.85[AMR][1000 genomes]
rs6750238	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178863600-178873400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:178872200-178873400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:178872200-178874000	Enhancers	Brain Germinal Matrix	brain
4	chr2:178873000-178873600	Enhancers	A549	lung
5	chr2:178873000-178873800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:178873000-178874000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:178873200-178873600	Enhancers	Brain Angular Gyrus	brain
8	chr2:178873200-178874000	Enhancers	Fetal Brain Male	brain

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