Variant report
| Variant | rs16866003 |
|---|---|
| Chromosome Location | chr2:178877187-178877188 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1347440 | 1.00[AMR][1000 genomes] |
| rs1527291 | 1.00[AMR][1000 genomes] |
| rs16823484 | 0.85[AMR][1000 genomes] |
| rs16865818 | 0.85[AMR][1000 genomes] |
| rs16865821 | 0.85[AMR][1000 genomes] |
| rs16865903 | 0.85[AMR][1000 genomes] |
| rs16865998 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16865999 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16866031 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16866034 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16866043 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16866058 | 1.00[AMR][1000 genomes] |
| rs16866108 | 1.00[AMR][1000 genomes] |
| rs2015183 | 0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3770053 | 1.00[AMR][1000 genomes] |
| rs3821011 | 0.83[AMR][1000 genomes] |
| rs6708449 | 0.85[AMR][1000 genomes] |
| rs6726477 | 0.88[ASN][1000 genomes] |
| rs6733229 | 0.85[AMR][1000 genomes] |
| rs6750238 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533377 | chr2:178718801-178963463 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007579 | chr2:178729330-178890946 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv875451 | chr2:178748294-178953409 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv998304 | chr2:178756380-178924378 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv536056 | chr2:178756380-178924378 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:178873600-178882800 | Weak transcription | Pancreas | Pancrea |
| 2 | chr2:178873600-178889600 | Weak transcription | A549 | lung |
