Variant report

Variant	rs16865821
Chromosome Location	chr2:178706092-178706093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178702452..178704995-chr2:178705681..178708457,3	MCF-7	breast:
2	chr2:178702819..178704367-chr2:178705919..178708336,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10164920	1.00[JPT][hapmap]
rs10165089	1.00[JPT][hapmap]
rs10168605	1.00[JPT][hapmap]
rs10170290	1.00[JPT][hapmap]
rs10170607	0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap]
rs10170914	1.00[CEU][hapmap]
rs10171486	1.00[JPT][hapmap]
rs10174604	1.00[JPT][hapmap]
rs10181377	1.00[JPT][hapmap]
rs10183144	1.00[JPT][hapmap]
rs10186239	1.00[JPT][hapmap]
rs10190066	1.00[JPT][hapmap]
rs10190805	1.00[JPT][hapmap]
rs10191328	1.00[JPT][hapmap]
rs10193299	1.00[JPT][hapmap]
rs10194612	1.00[JPT][hapmap]
rs10198681	1.00[JPT][hapmap]
rs10198877	0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap]
rs10208501	1.00[JPT][hapmap]
rs10211341	1.00[JPT][hapmap]
rs10221783	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs10497483	1.00[JPT][hapmap]
rs10930817	1.00[JPT][hapmap]
rs12151755	1.00[JPT][hapmap]
rs12693128	1.00[JPT][hapmap]
rs12693133	1.00[JPT][hapmap]
rs12995449	1.00[JPT][hapmap]
rs13003683	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13008170	1.00[JPT][hapmap]
rs13008780	1.00[JPT][hapmap]
rs13009350	1.00[JPT][hapmap]
rs13015148	1.00[JPT][hapmap]
rs13386418	1.00[JPT][hapmap]
rs13400109	1.00[JPT][hapmap]
rs13400411	1.00[JPT][hapmap]
rs13410185	1.00[JPT][hapmap]
rs13411527	1.00[JPT][hapmap]
rs13411542	1.00[JPT][hapmap]
rs13411922	0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap]
rs13411970	1.00[JPT][hapmap]
rs13412181	1.00[CEU][hapmap]
rs13413095	1.00[JPT][hapmap]
rs13413731	1.00[JPT][hapmap]
rs13419437	1.00[JPT][hapmap]
rs13422276	1.00[JPT][hapmap]
rs13425873	1.00[JPT][hapmap]
rs13428032	0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap]
rs1358299	0.82[ASN][1000 genomes]
rs1527291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16823484	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16865786	0.83[EUR][1000 genomes]
rs16865818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16865903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16865951	0.88[YRI][hapmap]
rs16865998	0.85[AMR][1000 genomes]
rs16865999	0.85[AMR][1000 genomes]
rs16866003	0.85[AMR][1000 genomes]
rs17329742	1.00[JPT][hapmap]
rs17329956	1.00[JPT][hapmap]
rs17401468	0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17401650	0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap]
rs17401671	1.00[JPT][hapmap]
rs1898012	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2015183	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs3770053	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821011	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs41357848	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4377360	1.00[JPT][hapmap]
rs4423634	1.00[JPT][hapmap]
rs57019461	1.00[AFR][1000 genomes]
rs57352786	0.88[AFR][1000 genomes]
rs57715307	0.88[AFR][1000 genomes]
rs58297855	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58779934	0.96[AFR][1000 genomes]
rs61339042	0.88[AFR][1000 genomes]
rs61448024	0.88[AFR][1000 genomes]
rs61541689	0.88[AFR][1000 genomes]
rs6708449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6717171	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs6733229	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6750238	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7561059	1.00[JPT][hapmap]
rs7578601	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9288011	1.00[JPT][hapmap]
rs9646795	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178699800-178716600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:178704000-178709000	Weak transcription	Pancreas	Pancrea

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