Variant report

Variant	rs1898012
Chromosome Location	chr2:178816951-178816952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178814531..178817473-chr2:178843941..178845448,2	K562	blood:

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10164920	1.00[JPT][hapmap]
rs10165089	1.00[JPT][hapmap]
rs10168605	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10170290	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10170607	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs10170914	1.00[CEU][hapmap]
rs10171486	1.00[JPT][hapmap]
rs10174604	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10181377	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10182833	0.84[ASN][1000 genomes]
rs10183144	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10186239	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10190066	1.00[JPT][hapmap]
rs10190805	1.00[JPT][hapmap]
rs10191328	1.00[JPT][hapmap]
rs10192990	0.84[ASN][1000 genomes]
rs10193299	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10194612	1.00[JPT][hapmap]
rs10195497	0.84[ASN][1000 genomes]
rs10198681	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10198877	0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10208501	1.00[JPT][hapmap]
rs10211341	1.00[JPT][hapmap]
rs10221783	0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10497475	1.00[MKK][hapmap]
rs10497483	1.00[JPT][hapmap]
rs10930817	1.00[JPT][hapmap]
rs12151755	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12693128	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12693133	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12693145	0.84[ASN][1000 genomes]
rs12988331	0.84[ASN][1000 genomes]
rs12995449	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13003683	1.00[JPT][hapmap]
rs13008170	1.00[JPT][hapmap]
rs13008780	1.00[JPT][hapmap]
rs13009350	1.00[JPT][hapmap]
rs13015148	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13386418	1.00[JPT][hapmap]
rs13396207	0.84[ASN][1000 genomes]
rs13400109	1.00[JPT][hapmap]
rs13400411	1.00[JPT][hapmap]
rs13410185	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13411527	1.00[JPT][hapmap]
rs13411542	1.00[JPT][hapmap]
rs13411922	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs13411970	1.00[JPT][hapmap]
rs13412181	1.00[CEU][hapmap]
rs13413095	1.00[JPT][hapmap]
rs13413731	1.00[JPT][hapmap]
rs13419437	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13422276	1.00[JPT][hapmap]
rs13425873	1.00[JPT][hapmap]
rs13427912	0.84[ASN][1000 genomes]
rs13428032	0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1347440	1.00[AMR][1000 genomes]
rs1527291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16823484	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16865786	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16865818	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16865821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16865846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16865903	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16865998	1.00[AMR][1000 genomes]
rs16865999	1.00[AMR][1000 genomes]
rs16866003	1.00[AMR][1000 genomes]
rs16866031	0.85[AMR][1000 genomes]
rs16866034	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs16866043	1.00[AMR][1000 genomes]
rs16866058	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16866088	1.00[CEU][hapmap]
rs16866108	1.00[AMR][1000 genomes]
rs17329742	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17329956	1.00[JPT][hapmap]
rs17401468	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs17401650	0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17401671	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2015183	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs35267683	0.80[ASN][1000 genomes]
rs35385829	0.84[ASN][1000 genomes]
rs35625771	0.84[ASN][1000 genomes]
rs35758079	0.84[ASN][1000 genomes]
rs3770053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3821011	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41357848	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs4377360	1.00[JPT][hapmap]
rs4423634	1.00[JPT][hapmap]
rs58297855	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6708449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6726222	1.00[JPT][hapmap]
rs6733229	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6750238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71423515	0.84[ASN][1000 genomes]
rs71423518	0.84[ASN][1000 genomes]
rs71423519	0.84[ASN][1000 genomes]
rs7561059	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9288011	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9646795	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv3055	chr2:178800438-178819638	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2762296	chr2:178812726-178818029	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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