Variant report

Variant	rs57961232
Chromosome Location	chr6:81303920-81303921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1020044	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10498922	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10498923	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11752368	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11752731	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11963755	0.87[EUR][1000 genomes]
rs11963784	0.87[EUR][1000 genomes]
rs11963880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11966105	0.87[EUR][1000 genomes]
rs11966395	0.87[EUR][1000 genomes]
rs11969171	0.87[EUR][1000 genomes]
rs1370139	0.87[EUR][1000 genomes]
rs1436876	0.87[EUR][1000 genomes]
rs1545108	0.87[EUR][1000 genomes]
rs17754916	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17755364	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17755544	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17811367	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17811451	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2118146	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4538675	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4607395	0.87[EUR][1000 genomes]
rs4639292	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56293655	0.87[EUR][1000 genomes]
rs57091572	0.88[EUR][1000 genomes]
rs57688593	0.88[EUR][1000 genomes]
rs57846754	0.88[EUR][1000 genomes]
rs58167343	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6927060	0.87[EUR][1000 genomes]
rs72900010	0.88[EUR][1000 genomes]
rs72900057	0.86[EUR][1000 genomes]
rs72901930	0.88[EUR][1000 genomes]
rs72901972	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72901979	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72901986	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72901988	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72903917	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72903939	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72903959	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72903988	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7765619	0.87[EUR][1000 genomes]
rs7768393	0.87[EUR][1000 genomes]
rs7768485	0.87[EUR][1000 genomes]
rs9443793	0.87[EUR][1000 genomes]
rs9449036	0.86[EUR][1000 genomes]
rs9449037	0.87[EUR][1000 genomes]
rs9449043	0.87[EUR][1000 genomes]
rs9449045	0.87[EUR][1000 genomes]
rs9449046	0.87[EUR][1000 genomes]
rs9449049	0.87[EUR][1000 genomes]
rs9449050	0.87[EUR][1000 genomes]
rs998759	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2757182	chr6:81265495-81304211	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2759448	chr6:81265495-81304211	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1020533	chr6:81288890-81406533	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv538340	chr6:81288890-81406533	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv508417	chr6:81290516-81330590	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv823760	chr6:81299581-81304386	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81294800-81317000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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