Variant report

Variant	rs7765619
Chromosome Location	chr6:81227804-81227805
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1020044	0.94[EUR][1000 genomes]
rs10498922	0.95[EUR][1000 genomes]
rs10498923	0.94[EUR][1000 genomes]
rs11752368	0.94[EUR][1000 genomes]
rs11752731	0.93[EUR][1000 genomes]
rs11963755	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963784	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963880	0.88[EUR][1000 genomes]
rs11966105	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966395	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969171	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370139	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436876	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545108	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17754916	0.96[EUR][1000 genomes]
rs17755364	0.95[EUR][1000 genomes]
rs17755544	0.94[EUR][1000 genomes]
rs17811367	0.96[EUR][1000 genomes]
rs17811451	0.96[EUR][1000 genomes]
rs2118146	0.95[EUR][1000 genomes]
rs4538675	0.93[EUR][1000 genomes]
rs4596443	0.88[EUR][1000 genomes]
rs4607395	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4639292	0.93[EUR][1000 genomes]
rs56293655	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57091572	0.90[EUR][1000 genomes]
rs57688593	0.90[EUR][1000 genomes]
rs57846754	0.90[EUR][1000 genomes]
rs57961232	0.87[EUR][1000 genomes]
rs58167343	0.94[EUR][1000 genomes]
rs6927060	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72900010	0.90[EUR][1000 genomes]
rs72900057	0.89[EUR][1000 genomes]
rs72901930	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901972	0.94[EUR][1000 genomes]
rs72901979	0.94[EUR][1000 genomes]
rs72901986	0.93[EUR][1000 genomes]
rs72901988	0.93[EUR][1000 genomes]
rs72903917	0.93[EUR][1000 genomes]
rs72903939	0.91[EUR][1000 genomes]
rs72903959	0.83[EUR][1000 genomes]
rs72903988	0.88[EUR][1000 genomes]
rs73473502	0.92[AFR][1000 genomes]
rs7768393	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768485	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443793	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449035	0.92[AFR][1000 genomes]
rs9449036	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9449037	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9449038	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9449041	0.92[AFR][1000 genomes]
rs9449042	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9449043	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9449045	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449046	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449049	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449050	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998759	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81226800-81230000	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:81227000-81232800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:81227200-81229400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:81227200-81232600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:81227600-81231800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:81227600-81231800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:81227600-81231800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:81227600-81232800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:81227800-81228000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:81227800-81232000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links