Variant report

Variant	rs9449035
Chromosome Location	chr6:81223815-81223816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs11963283	0.96[ASN][1000 genomes]
rs11963755	0.93[AFR][1000 genomes]
rs11963784	0.93[AFR][1000 genomes]
rs11963932	0.96[ASN][1000 genomes]
rs11966105	0.93[AFR][1000 genomes]
rs11966186	0.96[ASN][1000 genomes]
rs11966395	0.92[AFR][1000 genomes]
rs11968846	0.85[ASN][1000 genomes]
rs11968922	0.85[ASN][1000 genomes]
rs11969171	0.93[AFR][1000 genomes]
rs11970740	1.00[EUR][1000 genomes]
rs12332795	0.96[ASN][1000 genomes]
rs12332966	0.96[ASN][1000 genomes]
rs12333205	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12333251	0.96[ASN][1000 genomes]
rs1370139	0.93[AFR][1000 genomes]
rs1377977	0.96[ASN][1000 genomes]
rs1377978	0.96[ASN][1000 genomes]
rs1436876	0.93[AFR][1000 genomes]
rs1545108	0.93[AFR][1000 genomes]
rs16891947	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16891950	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28380152	0.85[ASN][1000 genomes]
rs4569928	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4607395	0.93[AFR][1000 genomes]
rs55685719	0.96[ASN][1000 genomes]
rs56180349	0.96[ASN][1000 genomes]
rs56293655	0.93[AFR][1000 genomes]
rs57974544	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58511607	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58667188	0.96[ASN][1000 genomes]
rs59084260	0.96[ASN][1000 genomes]
rs60453104	0.96[ASN][1000 genomes]
rs6902143	0.92[ASN][1000 genomes]
rs6907126	0.96[ASN][1000 genomes]
rs6927060	0.93[AFR][1000 genomes]
rs6928662	0.96[ASN][1000 genomes]
rs73473502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7744624	0.96[ASN][1000 genomes]
rs7745055	0.96[ASN][1000 genomes]
rs7746193	0.92[ASN][1000 genomes]
rs7756619	0.96[ASN][1000 genomes]
rs7761017	0.96[ASN][1000 genomes]
rs7761850	0.96[ASN][1000 genomes]
rs7765619	0.92[AFR][1000 genomes]
rs7768393	0.92[AFR][1000 genomes]
rs7768485	0.93[AFR][1000 genomes]
rs7776114	0.96[ASN][1000 genomes]
rs9443778	0.96[ASN][1000 genomes]
rs9443782	0.96[ASN][1000 genomes]
rs9443783	0.96[ASN][1000 genomes]
rs9443784	0.91[ASN][1000 genomes]
rs9443793	0.93[AFR][1000 genomes]
rs9443794	0.96[ASN][1000 genomes]
rs9443795	0.96[ASN][1000 genomes]
rs9443796	0.96[ASN][1000 genomes]
rs9443798	0.96[ASN][1000 genomes]
rs9443803	0.85[ASN][1000 genomes]
rs9449014	0.96[ASN][1000 genomes]
rs9449015	0.96[ASN][1000 genomes]
rs9449016	0.96[ASN][1000 genomes]
rs9449017	0.96[ASN][1000 genomes]
rs9449018	0.96[ASN][1000 genomes]
rs9449019	0.96[ASN][1000 genomes]
rs9449020	0.91[ASN][1000 genomes]
rs9449021	0.91[ASN][1000 genomes]
rs9449022	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9449023	0.91[ASN][1000 genomes]
rs9449024	0.87[ASN][1000 genomes]
rs9449036	0.87[AFR][1000 genomes]
rs9449037	0.93[AFR][1000 genomes]
rs9449038	0.90[AFR][1000 genomes]
rs9449040	0.96[ASN][1000 genomes]
rs9449041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9449043	0.93[AFR][1000 genomes]
rs9449044	0.96[ASN][1000 genomes]
rs9449045	0.93[AFR][1000 genomes]
rs9449046	0.93[AFR][1000 genomes]
rs9449049	0.93[AFR][1000 genomes]
rs9449050	0.93[AFR][1000 genomes]
rs9449051	0.96[ASN][1000 genomes]
rs9449053	0.92[ASN][1000 genomes]
rs9449054	0.88[ASN][1000 genomes]
rs9449056	0.96[ASN][1000 genomes]
rs9449057	0.96[ASN][1000 genomes]
rs9449062	0.96[ASN][1000 genomes]
rs9449065	0.96[ASN][1000 genomes]
rs9449077	0.92[ASN][1000 genomes]
rs9449078	0.92[ASN][1000 genomes]
rs9449079	0.92[ASN][1000 genomes]
rs9449085	0.88[ASN][1000 genomes]
rs9449086	0.96[ASN][1000 genomes]
rs9449087	0.96[ASN][1000 genomes]
rs9449088	0.96[ASN][1000 genomes]
rs9449092	0.85[ASN][1000 genomes]
rs9449096	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81223600-81224000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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