Variant report

Variant	rs9449096
Chromosome Location	chr6:81315073-81315074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81047806..81048624-chr6:81314824..81315362,2	MCF-7	breast:
2	chr6:81314911..81315522-chr6:81785483..81786072,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11963283	0.89[ASN][1000 genomes]
rs11963932	0.89[ASN][1000 genomes]
rs11966186	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968846	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968922	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12332795	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12332966	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12333205	0.85[ASN][1000 genomes]
rs12333251	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1377977	0.89[ASN][1000 genomes]
rs1377978	0.89[ASN][1000 genomes]
rs16891947	0.89[ASN][1000 genomes]
rs16891950	0.89[ASN][1000 genomes]
rs28380152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28420284	0.93[ASN][1000 genomes]
rs4569928	0.81[ASN][1000 genomes]
rs55685719	0.89[ASN][1000 genomes]
rs56180349	0.89[ASN][1000 genomes]
rs57974544	0.81[ASN][1000 genomes]
rs58511607	0.81[ASN][1000 genomes]
rs58667188	0.89[ASN][1000 genomes]
rs59084260	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60453104	0.89[ASN][1000 genomes]
rs654625	1.00[CHB][hapmap]
rs6907126	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6928662	0.89[ASN][1000 genomes]
rs73473502	0.89[ASN][1000 genomes]
rs7744624	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7745055	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7756619	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7761017	0.89[ASN][1000 genomes]
rs7761850	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7776114	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9443778	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9443782	0.81[ASN][1000 genomes]
rs9443783	0.81[ASN][1000 genomes]
rs9443794	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9443795	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9443796	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9443798	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9443803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449014	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9449015	0.81[ASN][1000 genomes]
rs9449016	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9449017	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9449018	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9449019	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9449035	0.85[ASN][1000 genomes]
rs9449040	0.89[ASN][1000 genomes]
rs9449041	0.89[ASN][1000 genomes]
rs9449044	0.89[ASN][1000 genomes]
rs9449051	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9449053	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9449054	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9449056	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9449057	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9449062	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9449065	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9449077	0.85[ASN][1000 genomes]
rs9449078	0.85[ASN][1000 genomes]
rs9449079	0.85[ASN][1000 genomes]
rs9449085	0.82[ASN][1000 genomes]
rs9449086	0.89[ASN][1000 genomes]
rs9449087	0.89[ASN][1000 genomes]
rs9449088	0.89[ASN][1000 genomes]
rs9449092	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449095	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1020533	chr6:81288890-81406533	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv538340	chr6:81288890-81406533	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv508417	chr6:81290516-81330590	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1015520	chr6:81309213-81374699	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81294800-81317000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81314600-81315800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:81314800-81315200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:81314800-81315200	Enhancers	Hela-S3	cervix
5	chr6:81314800-81315200	Enhancers	NHEK	skin
6	chr6:81314800-81315400	Enhancers	NHLF	lung
7	chr6:81314800-81315600	Enhancers	HMEC	breast
8	chr6:81314800-81316200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:81314800-81317800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:81314800-81321000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:81315000-81316000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:81315000-81317000	Weak transcription	HSMM	muscle

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