Variant report

Variant	rs9449016
Chromosome Location	chr6:81217630-81217631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81213174..81214838-chr6:81216651..81219122,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11963283	0.92[ASN][1000 genomes]
rs11963932	0.92[ASN][1000 genomes]
rs11966186	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11968846	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11968922	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11970740	0.84[ASN][1000 genomes]
rs12332795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12332966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12333205	0.88[ASN][1000 genomes]
rs12333251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1377977	0.92[ASN][1000 genomes]
rs1377978	0.92[ASN][1000 genomes]
rs16891947	0.92[ASN][1000 genomes]
rs16891950	0.92[ASN][1000 genomes]
rs28380152	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4569928	1.00[ASN][1000 genomes]
rs55685719	0.92[ASN][1000 genomes]
rs56180349	0.92[ASN][1000 genomes]
rs57974544	1.00[ASN][1000 genomes]
rs58511607	1.00[ASN][1000 genomes]
rs58667188	0.92[ASN][1000 genomes]
rs59084260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60453104	0.92[ASN][1000 genomes]
rs654625	1.00[CHB][hapmap]
rs6902143	0.96[ASN][1000 genomes]
rs6907126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6928662	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73473502	0.92[ASN][1000 genomes]
rs7744624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7745055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7746193	0.96[ASN][1000 genomes]
rs7756619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7761017	0.92[ASN][1000 genomes]
rs7761850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7776114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9443778	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443782	1.00[ASN][1000 genomes]
rs9443783	1.00[ASN][1000 genomes]
rs9443784	0.96[ASN][1000 genomes]
rs9443794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9443795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9443796	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9443798	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9443803	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9449014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9449017	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449018	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449019	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449020	0.96[ASN][1000 genomes]
rs9449021	0.96[ASN][1000 genomes]
rs9449022	0.96[ASN][1000 genomes]
rs9449023	0.96[ASN][1000 genomes]
rs9449024	0.92[ASN][1000 genomes]
rs9449035	0.96[ASN][1000 genomes]
rs9449040	0.92[ASN][1000 genomes]
rs9449041	0.92[ASN][1000 genomes]
rs9449044	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9449051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449053	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9449054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9449056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449062	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449065	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449077	0.88[ASN][1000 genomes]
rs9449078	0.88[ASN][1000 genomes]
rs9449079	0.88[ASN][1000 genomes]
rs9449085	0.85[ASN][1000 genomes]
rs9449086	0.92[ASN][1000 genomes]
rs9449087	0.92[ASN][1000 genomes]
rs9449088	0.92[ASN][1000 genomes]
rs9449092	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9449096	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81208000-81222600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:81217200-81220400	Enhancers	HepG2	liver

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