Variant report

Variant	rs9449053
Chromosome Location	chr6:81241853-81241854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10943720	0.81[YRI][hapmap]
rs11963283	0.96[ASN][1000 genomes]
rs11963932	0.96[ASN][1000 genomes]
rs11966186	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11968846	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11968922	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12332795	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12332966	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12333205	0.92[ASN][1000 genomes]
rs12333251	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1377977	0.96[ASN][1000 genomes]
rs1377978	0.96[ASN][1000 genomes]
rs16891947	0.96[ASN][1000 genomes]
rs16891950	0.96[ASN][1000 genomes]
rs28380152	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4569928	0.88[ASN][1000 genomes]
rs55685719	0.96[ASN][1000 genomes]
rs56180349	0.96[ASN][1000 genomes]
rs57974544	0.88[ASN][1000 genomes]
rs58511607	0.88[ASN][1000 genomes]
rs58667188	0.96[ASN][1000 genomes]
rs59084260	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60453104	0.96[ASN][1000 genomes]
rs6902143	0.85[ASN][1000 genomes]
rs6907126	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6928662	0.96[ASN][1000 genomes]
rs73473502	0.96[ASN][1000 genomes]
rs7744624	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7745055	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7746193	0.85[ASN][1000 genomes]
rs7756619	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7761017	0.96[ASN][1000 genomes]
rs7761850	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7776114	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9443778	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9443782	0.88[ASN][1000 genomes]
rs9443783	0.88[ASN][1000 genomes]
rs9443784	0.84[ASN][1000 genomes]
rs9443794	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9443795	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9443796	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9443798	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9443803	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9449014	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9449015	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9449016	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9449017	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9449018	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9449019	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9449020	0.84[ASN][1000 genomes]
rs9449021	0.84[ASN][1000 genomes]
rs9449022	0.84[ASN][1000 genomes]
rs9449023	0.84[ASN][1000 genomes]
rs9449024	0.80[ASN][1000 genomes]
rs9449035	0.92[ASN][1000 genomes]
rs9449040	0.96[ASN][1000 genomes]
rs9449041	0.96[ASN][1000 genomes]
rs9449044	0.96[ASN][1000 genomes]
rs9449051	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9449054	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9449056	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9449057	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9449062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9449065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9449077	0.92[ASN][1000 genomes]
rs9449078	0.92[ASN][1000 genomes]
rs9449079	0.92[ASN][1000 genomes]
rs9449085	0.89[ASN][1000 genomes]
rs9449086	0.96[ASN][1000 genomes]
rs9449087	0.96[ASN][1000 genomes]
rs9449088	0.96[ASN][1000 genomes]
rs9449092	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9449096	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv463908	chr6:81232993-81287675	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604054	chr6:81232993-81287675	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81233600-81249600	Weak transcription	HSMM	muscle
2	chr6:81234200-81245000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:81234200-81245200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:81234200-81249600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:81241200-81246600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:81241600-81242000	Enhancers	Fetal Lung	lung
7	chr6:81241600-81242000	Enhancers	NHEK	skin
8	chr6:81241600-81242200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:81241800-81242000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:81241800-81242000	Enhancers	NHDF-Ad	bronchial

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