Variant report

Variant	rs9449057
Chromosome Location	chr6:81246354-81246355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81244830..81247376-chr6:81252160..81253797,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11963283	1.00[ASN][1000 genomes]
rs11963932	1.00[ASN][1000 genomes]
rs11966186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968846	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968922	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12332795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12332966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333205	0.96[ASN][1000 genomes]
rs12333251	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377977	1.00[ASN][1000 genomes]
rs1377978	1.00[ASN][1000 genomes]
rs16891947	1.00[ASN][1000 genomes]
rs16891950	1.00[ASN][1000 genomes]
rs28380152	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28420284	0.83[ASN][1000 genomes]
rs4569928	0.92[ASN][1000 genomes]
rs55685719	1.00[ASN][1000 genomes]
rs56180349	1.00[ASN][1000 genomes]
rs57974544	0.92[ASN][1000 genomes]
rs58511607	0.92[ASN][1000 genomes]
rs58667188	1.00[ASN][1000 genomes]
rs59084260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60453104	1.00[ASN][1000 genomes]
rs6902143	0.88[ASN][1000 genomes]
rs6907126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928662	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73473502	1.00[ASN][1000 genomes]
rs7744624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746193	0.88[ASN][1000 genomes]
rs7756619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761017	1.00[ASN][1000 genomes]
rs7761850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443778	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9443782	0.92[ASN][1000 genomes]
rs9443783	0.92[ASN][1000 genomes]
rs9443784	0.88[ASN][1000 genomes]
rs9443794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443796	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443803	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9449014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449015	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9449016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449017	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449018	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449019	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449020	0.88[ASN][1000 genomes]
rs9449021	0.88[ASN][1000 genomes]
rs9449022	0.88[ASN][1000 genomes]
rs9449023	0.88[ASN][1000 genomes]
rs9449024	0.84[ASN][1000 genomes]
rs9449035	0.96[ASN][1000 genomes]
rs9449040	1.00[ASN][1000 genomes]
rs9449041	1.00[ASN][1000 genomes]
rs9449044	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9449051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449053	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9449054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9449056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449062	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449065	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449077	0.96[ASN][1000 genomes]
rs9449078	0.96[ASN][1000 genomes]
rs9449079	0.96[ASN][1000 genomes]
rs9449085	0.92[ASN][1000 genomes]
rs9449086	1.00[ASN][1000 genomes]
rs9449087	1.00[ASN][1000 genomes]
rs9449088	1.00[ASN][1000 genomes]
rs9449092	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9449096	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv463908	chr6:81232993-81287675	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604054	chr6:81232993-81287675	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81233600-81249600	Weak transcription	HSMM	muscle
2	chr6:81234200-81249600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:81241200-81246600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:81245800-81247800	ZNF genes & repeats	HMEC	breast
5	chr6:81246000-81246600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:81246000-81246800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:81246000-81250000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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