Variant report
Variant | rs9449079 |
---|---|
Chromosome Location | chr6:81283479-81283480 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11963283 | 0.96[ASN][1000 genomes] |
rs11963932 | 0.96[ASN][1000 genomes] |
rs11966186 | 0.85[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs11968846 | 0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs11968922 | 0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs12332795 | 0.96[ASN][1000 genomes] |
rs12332966 | 0.96[ASN][1000 genomes] |
rs12333205 | 0.92[ASN][1000 genomes] |
rs12333251 | 0.96[ASN][1000 genomes] |
rs1377977 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1377978 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs16891947 | 0.96[ASN][1000 genomes] |
rs16891950 | 0.96[ASN][1000 genomes] |
rs28380152 | 0.85[ASN][1000 genomes] |
rs4569928 | 0.88[ASN][1000 genomes] |
rs55685719 | 0.96[ASN][1000 genomes] |
rs56180349 | 0.96[ASN][1000 genomes] |
rs57974544 | 0.88[ASN][1000 genomes] |
rs58511607 | 0.88[ASN][1000 genomes] |
rs58667188 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs59084260 | 0.96[ASN][1000 genomes] |
rs60453104 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6902143 | 0.85[ASN][1000 genomes] |
rs6907126 | 0.96[ASN][1000 genomes] |
rs6928662 | 0.96[ASN][1000 genomes] |
rs73473502 | 0.96[ASN][1000 genomes] |
rs7744624 | 0.96[ASN][1000 genomes] |
rs7745055 | 0.96[ASN][1000 genomes] |
rs7746193 | 0.85[ASN][1000 genomes] |
rs7756619 | 0.96[ASN][1000 genomes] |
rs7761017 | 0.96[ASN][1000 genomes] |
rs7761850 | 0.96[ASN][1000 genomes] |
rs7776114 | 0.96[ASN][1000 genomes] |
rs9443778 | 0.88[ASN][1000 genomes] |
rs9443782 | 0.88[ASN][1000 genomes] |
rs9443783 | 0.88[ASN][1000 genomes] |
rs9443784 | 0.84[ASN][1000 genomes] |
rs9443794 | 0.96[ASN][1000 genomes] |
rs9443795 | 0.96[ASN][1000 genomes] |
rs9443796 | 0.85[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs9443798 | 0.85[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs9443803 | 0.85[ASN][1000 genomes] |
rs9449014 | 0.88[ASN][1000 genomes] |
rs9449015 | 0.88[ASN][1000 genomes] |
rs9449016 | 0.88[ASN][1000 genomes] |
rs9449017 | 0.88[ASN][1000 genomes] |
rs9449018 | 0.88[ASN][1000 genomes] |
rs9449019 | 0.88[ASN][1000 genomes] |
rs9449020 | 0.84[ASN][1000 genomes] |
rs9449021 | 0.84[ASN][1000 genomes] |
rs9449022 | 0.84[ASN][1000 genomes] |
rs9449023 | 0.84[ASN][1000 genomes] |
rs9449024 | 0.80[ASN][1000 genomes] |
rs9449035 | 0.92[ASN][1000 genomes] |
rs9449040 | 0.96[ASN][1000 genomes] |
rs9449041 | 0.96[ASN][1000 genomes] |
rs9449044 | 0.96[ASN][1000 genomes] |
rs9449051 | 0.96[ASN][1000 genomes] |
rs9449053 | 0.92[ASN][1000 genomes] |
rs9449054 | 0.89[ASN][1000 genomes] |
rs9449056 | 0.96[ASN][1000 genomes] |
rs9449057 | 0.96[ASN][1000 genomes] |
rs9449062 | 0.96[ASN][1000 genomes] |
rs9449065 | 0.96[ASN][1000 genomes] |
rs9449077 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9449078 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9449085 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9449086 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9449087 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9449088 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9449092 | 0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs9449096 | 0.85[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv531333 | chr6:81042427-81836484 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
2 | nsv1019670 | chr6:81086504-81569984 | ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
3 | nsv915714 | chr6:81134888-81366749 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
4 | nsv886312 | chr6:81166178-81309481 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | nsv463908 | chr6:81232993-81287675 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | nsv604054 | chr6:81232993-81287675 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | esv998220 | chr6:81258085-81298829 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | nsv522523 | chr6:81262988-81298688 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
9 | esv2757182 | chr6:81265495-81304211 | Enhancers Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
10 | esv2759448 | chr6:81265495-81304211 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
11 | esv2763979 | chr6:81271296-81295103 | Active TSS Weak transcription Enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
12 | nsv523216 | chr6:81274336-81287675 | Enhancers Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
13 | nsv1022350 | chr6:81275753-81289522 | Enhancers Weak transcription Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
14 | nsv1032533 | chr6:81275753-81294402 | Weak transcription Enhancers Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
15 | nsv1016976 | chr6:81276080-81289522 | Enhancers Active TSS Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
16 | nsv604055 | chr6:81276726-81293161 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
17 | nsv970721 | chr6:81277532-81291968 | Enhancers Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
18 | nsv7933 | chr6:81277557-81293811 | Active TSS Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
19 | nsv1031949 | chr6:81277973-81289522 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
20 | nsv1016156 | chr6:81277973-81294402 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
21 | esv3584851 | chr6:81277985-81289534 | Weak transcription Active TSS Enhancers | n/a | n/a | inside rSNPs | diseases |
22 | esv3474618 | chr6:81282833-81287331 | Active TSS Enhancers | n/a | n/a | inside rSNPs | diseases |
23 | esv3474621 | chr6:81282833-81287331 | Active TSS Enhancers | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:81283200-81283600 | Enhancers | H1 Cell Line | embryonic stem cell |
2 | chr6:81283200-81283600 | Active TSS | HUES6 Cell Line | embryonic stem cell |
3 | chr6:81283200-81283800 | Active TSS | ES-I3 Cell Line | embryonic stem cell |