Variant report
Variant | rs57969582 |
---|---|
Chromosome Location | chr5:98170624-98170625 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10044680 | 1.00[EUR][1000 genomes] |
rs10045317 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10046011 | 1.00[EUR][1000 genomes] |
rs10060286 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13358830 | 1.00[EUR][1000 genomes] |
rs1382336 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1421635 | 1.00[EUR][1000 genomes] |
rs161743 | 1.00[EUR][1000 genomes] |
rs162139 | 1.00[EUR][1000 genomes] |
rs162141 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs162142 | 1.00[EUR][1000 genomes] |
rs162143 | 1.00[EUR][1000 genomes] |
rs162157 | 1.00[EUR][1000 genomes] |
rs162160 | 1.00[EUR][1000 genomes] |
rs162162 | 1.00[EUR][1000 genomes] |
rs170579 | 1.00[EUR][1000 genomes] |
rs17166187 | 1.00[EUR][1000 genomes] |
rs17166195 | 1.00[EUR][1000 genomes] |
rs17166198 | 1.00[EUR][1000 genomes] |
rs17166210 | 1.00[EUR][1000 genomes] |
rs17166218 | 1.00[EUR][1000 genomes] |
rs17166224 | 1.00[EUR][1000 genomes] |
rs17166397 | 1.00[EUR][1000 genomes] |
rs17166450 | 1.00[EUR][1000 genomes] |
rs17166454 | 1.00[EUR][1000 genomes] |
rs179175 | 1.00[EUR][1000 genomes] |
rs1828171 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28782775 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs325198 | 1.00[EUR][1000 genomes] |
rs325216 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs327801 | 1.00[EUR][1000 genomes] |
rs327802 | 1.00[EUR][1000 genomes] |
rs327805 | 1.00[EUR][1000 genomes] |
rs451883 | 1.00[EUR][1000 genomes] |
rs59156696 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61578983 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6870416 | 1.00[EUR][1000 genomes] |
rs6875233 | 1.00[EUR][1000 genomes] |
rs6891520 | 1.00[EUR][1000 genomes] |
rs73151499 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73153514 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73153532 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73155421 | 1.00[EUR][1000 genomes] |
rs73155423 | 1.00[EUR][1000 genomes] |
rs7727696 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv882414 | chr5:98063710-98193164 | Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
2 | nsv882415 | chr5:98134186-98312447 | Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
3 | nsv882416 | chr5:98146106-98312447 | Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:98161000-98175400 | Weak transcription | Primary T cells from cord blood | blood |
2 | chr5:98164000-98175200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
3 | chr5:98169200-98175000 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
4 | chr5:98170400-98176600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |