Variant report

Variant	rs58033156
Chromosome Location	chr3:138003006-138003007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:138002942-138003293	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr3:138002990-138003297	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr3:138002949-138003293	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr3:138002938-138003294	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:137906619..137908524-chr3:138000915..138003468,2	MCF-7	breast:

Variant related genes	Relation type
ARMC8	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55944801	1.00[AMR][1000 genomes]
rs73867010	1.00[AMR][1000 genomes]
rs73867012	1.00[AMR][1000 genomes]
rs73867015	1.00[AMR][1000 genomes]
rs73867017	1.00[AMR][1000 genomes]
rs73867043	1.00[AMR][1000 genomes]
rs73867045	1.00[AMR][1000 genomes]
rs7634984	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137944800-138017400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:137954600-138014400	Weak transcription	NHDF-Ad	bronchial
3	chr3:137956400-138019400	Weak transcription	Small Intestine	intestine
4	chr3:137964800-138003800	Weak transcription	K562	blood
5	chr3:137977200-138019000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:137981800-138011600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:137982000-138026600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:137985200-138008200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:137986000-138017000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:137992200-138003800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:137992400-138008400	Weak transcription	Stomach Mucosa	stomach
12	chr3:137992600-138003200	Weak transcription	NHLF	lung
13	chr3:137992600-138003600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:137992600-138003600	Weak transcription	Psoas Muscle	Psoas
15	chr3:137992600-138004200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr3:137992600-138004400	Weak transcription	Pancreas	Pancrea
17	chr3:137992600-138005800	Weak transcription	A549	lung
18	chr3:137992600-138009000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:137992800-138003400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:137992800-138018200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr3:137993000-138003600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:137993000-138003800	Weak transcription	Brain Angular Gyrus	brain
23	chr3:137993200-138005400	Weak transcription	Esophagus	oesophagus
24	chr3:137993600-138003200	Weak transcription	Brain Germinal Matrix	brain
25	chr3:137993800-138003200	Weak transcription	Fetal Kidney	kidney
26	chr3:137993800-138003200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:137993800-138003200	Weak transcription	Spleen	Spleen
28	chr3:137993800-138003400	Weak transcription	Osteobl	bone
29	chr3:137993800-138003600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:137993800-138005000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:137994000-138003200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr3:137994000-138003600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:137994000-138003600	Weak transcription	Brain Substantia Nigra	brain
34	chr3:137994000-138003600	Weak transcription	HSMMtube	muscle
35	chr3:137994000-138005000	Weak transcription	Fetal Brain Male	brain
36	chr3:137994200-138007600	Weak transcription	Fetal Intestine Small	intestine
37	chr3:137994600-138008400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr3:137995200-138008000	Weak transcription	Hela-S3	cervix
39	chr3:137995400-138003200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr3:137995400-138007200	Weak transcription	HUVEC	blood vessel
41	chr3:137996600-138005200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:137997000-138003200	Weak transcription	Colon Smooth Muscle	Colon
43	chr3:137997000-138003200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:137997000-138003600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr3:137997000-138003600	Weak transcription	Fetal Lung	lung
46	chr3:137997000-138005600	Weak transcription	NH-A	brain
47	chr3:137998800-138003600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:137999600-138018600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:137999600-138018600	Strong transcription	Adipose Nuclei	Adipose
50	chr3:137999600-138018800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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