Variant report

Variant	rs73867043
Chromosome Location	chr3:137916005-137916006
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:137912018..137914217-chr3:137914520..137916809,2	K562	blood:
2	chr3:137914594..137916105-chr3:137916779..137918592,2	K562	blood:
3	chr3:137906774..137910394-chr3:137911786..137917069,7	K562	blood:
4	chr3:137905325..137907652-chr3:137914611..137916353,3	MCF-7	breast:
5	chr3:137915234..137917252-chr3:137922429..137925123,2	MCF-7	breast:
6	chr3:137904535..137910054-chr3:137912225..137921556,13	K562	blood:

Variant related genes	Relation type
ENSG00000114098	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55944801	1.00[AMR][1000 genomes]
rs58033156	1.00[AMR][1000 genomes]
rs73867010	1.00[AMR][1000 genomes]
rs73867012	1.00[AMR][1000 genomes]
rs73867015	1.00[AMR][1000 genomes]
rs73867017	1.00[AMR][1000 genomes]
rs73867045	1.00[AMR][1000 genomes]
rs7634984	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757890	chr3:137611789-137933835	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759180	chr3:137611789-137933835	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv998106	chr3:137851198-137934610	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv877536	chr3:137870523-137970907	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137907200-137919800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:137907600-137921800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:137907600-137922200	Weak transcription	Esophagus	oesophagus
4	chr3:137907600-137929400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:137907600-137941600	Weak transcription	Lung	lung
6	chr3:137907600-137942200	Weak transcription	Pancreas	Pancrea
7	chr3:137907600-137942400	Weak transcription	Spleen	Spleen
8	chr3:137907800-137922200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:137907800-137922400	Weak transcription	Thymus	Thymus
10	chr3:137907800-137925400	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:137907800-137941000	Weak transcription	Fetal Kidney	kidney
12	chr3:137908000-137922200	Weak transcription	Adipose Nuclei	Adipose
13	chr3:137908000-137922200	Weak transcription	Aorta	Aorta
14	chr3:137908000-137922200	Weak transcription	HSMMtube	muscle
15	chr3:137908000-137929200	Weak transcription	NHLF	lung
16	chr3:137908000-137940400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr3:137908200-137940600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:137908400-137929200	Weak transcription	Osteobl	bone
19	chr3:137908400-137941600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:137908400-137942200	Weak transcription	NHDF-Ad	bronchial
21	chr3:137908400-137942400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:137908400-137956200	Weak transcription	A549	lung
23	chr3:137908600-137918800	Weak transcription	Right Ventricle	heart
24	chr3:137908600-137924000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:137908800-137931000	Weak transcription	HUVEC	blood vessel
26	chr3:137908800-137941800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:137908800-137942200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr3:137909000-137916400	Weak transcription	Small Intestine	intestine
29	chr3:137909000-137918000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr3:137909000-137922200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr3:137909000-137922200	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:137909000-137932000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:137909800-137922800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:137910200-137918200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:137910200-137918200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:137910200-137918400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:137910600-137918800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr3:137910600-137921800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr3:137910600-137922000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:137910600-137935800	Weak transcription	Dnd41	blood
41	chr3:137910600-137941600	Weak transcription	Hela-S3	cervix
42	chr3:137910800-137916400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr3:137910800-137918000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr3:137910800-137918400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr3:137910800-137922200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr3:137910800-137928400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:137911000-137918000	Weak transcription	GM12878-XiMat	blood
48	chr3:137911000-137920800	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr3:137911000-137921800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:137911000-137922200	Weak transcription	Fetal Thymus	thymus

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