Variant report

Variant	rs73867012
Chromosome Location	chr3:137799118-137799119
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:137798306..137800637-chr3:137905206..137907659,2	MCF-7	breast:
2	chr3:137798158..137800063-chr3:137800310..137802167,2	MCF-7	breast:
3	chr3:137797953..137799816-chr3:137805788..137808409,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158163	Chromatin interaction
ENSG00000114098	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55944801	1.00[AMR][1000 genomes]
rs58033156	1.00[AMR][1000 genomes]
rs73867010	1.00[AMR][1000 genomes]
rs73867015	1.00[AMR][1000 genomes]
rs73867016	0.87[AFR][1000 genomes]
rs73867017	1.00[AMR][1000 genomes]
rs73867043	1.00[AMR][1000 genomes]
rs73867045	1.00[AMR][1000 genomes]
rs7634984	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757890	chr3:137611789-137933835	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759180	chr3:137611789-137933835	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2751978	chr3:137715302-137890750	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1007857	chr3:137767454-137843106	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1008563	chr3:137776151-137801394	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1002136	chr3:137776151-137806500	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv519971	chr3:137782655-137801213	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv522591	chr3:137782655-137801213	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137778200-137800600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:137778800-137800400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:137780000-137813400	Weak transcription	HUVEC	blood vessel
4	chr3:137780600-137811600	Weak transcription	Psoas Muscle	Psoas
5	chr3:137780800-137800600	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:137781000-137833200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:137782600-137800600	Weak transcription	Placenta	Placenta
8	chr3:137783000-137802000	Weak transcription	Fetal Brain Female	brain
9	chr3:137783200-137811600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:137783200-137821200	Weak transcription	Colonic Mucosa	Colon
11	chr3:137785000-137801000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:137785400-137805600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:137785600-137800600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:137786000-137802000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:137787200-137800400	Weak transcription	Gastric	stomach
16	chr3:137787600-137806600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:137787800-137800400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:137787800-137800400	Weak transcription	Brain Substantia Nigra	brain
19	chr3:137787800-137802600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:137787800-137805200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:137788000-137800400	Weak transcription	Stomach Mucosa	stomach
22	chr3:137789800-137803200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr3:137789800-137803600	Strong transcription	Fetal Lung	lung
24	chr3:137790800-137802400	Weak transcription	Fetal Intestine Large	intestine
25	chr3:137790800-137802800	Weak transcription	Brain Germinal Matrix	brain
26	chr3:137792000-137802000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr3:137792000-137802800	Weak transcription	Liver	Liver
28	chr3:137792000-137820600	Weak transcription	Esophagus	oesophagus
29	chr3:137792200-137805200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:137792400-137818200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:137792600-137802000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:137793600-137801400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:137793800-137803600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr3:137794200-137801200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:137794400-137800200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:137794600-137800000	Strong transcription	Ovary	ovary
37	chr3:137794600-137803400	Strong transcription	Fetal Muscle Leg	muscle
38	chr3:137794600-137803400	Strong transcription	Fetal Stomach	stomach
39	chr3:137795000-137801200	Strong transcription	Stomach Smooth Muscle	stomach
40	chr3:137795400-137799400	Strong transcription	Left Ventricle	heart
41	chr3:137795800-137803400	Strong transcription	Aorta	Aorta
42	chr3:137796000-137799800	Strong transcription	Colon Smooth Muscle	Colon
43	chr3:137796200-137801600	Weak transcription	Fetal Kidney	kidney
44	chr3:137796200-137801800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:137796200-137802400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:137796200-137803800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:137796200-137811400	Weak transcription	Fetal Brain Male	brain
48	chr3:137796400-137800000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr3:137796400-137800000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:137796400-137800400	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links