Variant report

Variant	rs580402
Chromosome Location	chr18:8679822-8679823
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11081403	0.84[ASN][1000 genomes]
rs11660801	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12455004	0.83[ASN][1000 genomes]
rs12604208	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12955230	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12959591	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34460428	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35195807	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs392603	0.81[CHB][hapmap]
rs4797324	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4798670	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226626	0.84[ASN][1000 genomes]
rs7240298	0.84[ASN][1000 genomes]
rs7241887	0.84[ASN][1000 genomes]
rs8086478	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8092876	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095368	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9676017	0.84[ASN][1000 genomes]
rs9948520	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8653800-8703400	Weak transcription	Right Atrium	heart
2	chr18:8676400-8682800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:8676400-8699600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr18:8679400-8680000	Enhancers	Esophagus	oesophagus
5	chr18:8679800-8685400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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