Variant report

Variant	rs11081403
Chromosome Location	chr18:8664894-8664895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8663885..8666414-chr18:8671675..8674406,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11660801	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12455004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12604208	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12955230	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12959591	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17479191	0.88[ASN][1000 genomes]
rs34460428	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35195807	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs392603	0.80[CHB][hapmap];0.83[ASN][1000 genomes]
rs400839	0.81[JPT][hapmap]
rs4797324	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4798668	0.88[ASN][1000 genomes]
rs4798670	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs529984	0.87[ASN][1000 genomes]
rs538700	0.87[ASN][1000 genomes]
rs580402	0.84[ASN][1000 genomes]
rs601126	0.87[ASN][1000 genomes]
rs62086810	0.83[ASN][1000 genomes]
rs62086811	0.85[ASN][1000 genomes]
rs7226626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7240298	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7241887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8086478	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8092876	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8095368	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9675533	0.87[ASN][1000 genomes]
rs9676017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9948520	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8653800-8703400	Weak transcription	Right Atrium	heart
2	chr18:8658400-8665200	Weak transcription	A549	lung
3	chr18:8662000-8665000	Weak transcription	Hela-S3	cervix
4	chr18:8662200-8665000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr18:8662200-8665000	Weak transcription	NHLF	lung
6	chr18:8662200-8665200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr18:8662200-8665200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr18:8662200-8665200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr18:8662200-8665200	Weak transcription	NH-A	brain
10	chr18:8662200-8665400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr18:8662200-8673400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr18:8662400-8665000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr18:8662400-8665000	Weak transcription	HUVEC	blood vessel
14	chr18:8662400-8665000	Weak transcription	K562	blood
15	chr18:8662400-8665000	Weak transcription	NHEK	skin
16	chr18:8662400-8665200	Weak transcription	NHDF-Ad	bronchial
17	chr18:8663400-8671800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr18:8663600-8665600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr18:8663800-8665400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr18:8664000-8665000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr18:8664000-8665200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr18:8664000-8665400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr18:8664000-8665400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr18:8664000-8665400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr18:8664000-8665400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr18:8664000-8665600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr18:8664800-8666600	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links