Variant report

Variant	rs17479191
Chromosome Location	chr18:8662567-8662568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:8656592..8659415-chr18:8661915..8663898,2	K562	blood:
2	chr18:8661421..8663171-chr18:8666380..8669348,2	MCF-7	breast:
3	chr18:8657777..8659380-chr18:8662029..8663549,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11081403	0.88[ASN][1000 genomes]
rs12455004	0.87[ASN][1000 genomes]
rs12955230	0.85[ASN][1000 genomes]
rs12959591	0.86[ASN][1000 genomes]
rs34460428	0.85[ASN][1000 genomes]
rs35195807	0.86[ASN][1000 genomes]
rs400839	0.86[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs4798668	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs529984	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs538700	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs601126	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7226626	0.88[ASN][1000 genomes]
rs7240298	0.88[ASN][1000 genomes]
rs7241887	0.88[ASN][1000 genomes]
rs9675533	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9676017	0.88[ASN][1000 genomes]
rs9948520	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2200	chr18:8618182-8663130	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8653800-8703400	Weak transcription	Right Atrium	heart
2	chr18:8658400-8665200	Weak transcription	A549	lung
3	chr18:8659000-8663800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:8660600-8663600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr18:8661000-8664000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr18:8661400-8662600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr18:8661400-8662800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr18:8661600-8662600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr18:8661800-8662600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr18:8661800-8662600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr18:8661800-8662600	Enhancers	Gastric	stomach
12	chr18:8661800-8662600	Enhancers	Stomach Mucosa	stomach
13	chr18:8661800-8662800	Flanking Active TSS	Fetal Brain Female	brain
14	chr18:8661800-8663000	Enhancers	Duodenum Mucosa	Duodenum
15	chr18:8661800-8663400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr18:8661800-8663800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr18:8661800-8664000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr18:8662000-8662600	Enhancers	Colonic Mucosa	Colon
19	chr18:8662000-8663600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:8662000-8664000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr18:8662000-8665000	Weak transcription	Hela-S3	cervix
22	chr18:8662200-8662600	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr18:8662200-8662600	Bivalent Enhancer	Fetal Intestine Large	intestine
24	chr18:8662200-8662600	Enhancers	GM12878-XiMat	blood
25	chr18:8662200-8663000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr18:8662200-8663200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr18:8662200-8663600	Enhancers	Fetal Brain Male	brain
28	chr18:8662200-8663800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr18:8662200-8664800	Weak transcription	HMEC	breast
30	chr18:8662200-8665000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr18:8662200-8665000	Weak transcription	NHLF	lung
32	chr18:8662200-8665200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr18:8662200-8665200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr18:8662200-8665200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr18:8662200-8665200	Weak transcription	NH-A	brain
36	chr18:8662200-8665400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr18:8662200-8673400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr18:8662400-8662600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr18:8662400-8663200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr18:8662400-8663400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr18:8662400-8663400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr18:8662400-8663600	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr18:8662400-8663800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr18:8662400-8664000	Enhancers	H9 Cell Line	embryonic stem cell
45	chr18:8662400-8664000	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr18:8662400-8664000	Enhancers	Brain Germinal Matrix	brain
47	chr18:8662400-8665000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr18:8662400-8665000	Weak transcription	HUVEC	blood vessel
49	chr18:8662400-8665000	Weak transcription	K562	blood
50	chr18:8662400-8665000	Weak transcription	NHEK	skin

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