Variant report

Variant	rs9675533
Chromosome Location	chr18:8670492-8670493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11081403	0.87[ASN][1000 genomes]
rs11660801	0.82[ASN][1000 genomes]
rs12455004	0.86[ASN][1000 genomes]
rs12604208	0.80[ASN][1000 genomes]
rs12955230	0.88[ASN][1000 genomes]
rs12959591	0.89[ASN][1000 genomes]
rs17479191	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34460428	0.88[ASN][1000 genomes]
rs35195807	0.89[ASN][1000 genomes]
rs400839	0.86[ASN][1000 genomes]
rs4798668	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs529984	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs538700	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs601126	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7226626	0.87[ASN][1000 genomes]
rs7240298	0.87[ASN][1000 genomes]
rs7241887	0.87[ASN][1000 genomes]
rs9676017	0.87[ASN][1000 genomes]
rs9948520	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450483	chr18:8670052-8673550	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8653800-8703400	Weak transcription	Right Atrium	heart
2	chr18:8662200-8673400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr18:8663400-8671800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr18:8666000-8670600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr18:8667000-8672800	Weak transcription	A549	lung
6	chr18:8668600-8671800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr18:8668800-8673000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr18:8669600-8672200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr18:8669600-8674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr18:8669800-8671800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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