Variant report

Variant	rs58058174
Chromosome Location	chr14:35804499-35804500
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:35759879..35772372-chr14:35797131..35808840,38	MCF-7	breast:
2	chr14:35342362..35344896-chr14:35804305..35806891,2	MCF-7	breast:
3	chr14:35802795..35808702-chr14:35869869..35875069,9	K562	blood:
4	chr14:35698279..35702159-chr14:35801289..35806332,5	MCF-7	breast:
5	chr14:35767852..35773242-chr14:35799435..35804534,8	MCF-7	breast:
6	chr14:35703363..35705105-chr14:35803523..35805230,2	MCF-7	breast:
7	chr14:35799325..35802587-chr14:35803466..35807668,8	K562	blood:
8	chr14:35803831..35805653-chr8:102502064..102503841,2	MCF-7	breast:
9	chr14:35801385..35810310-chr14:35830739..35838852,15	K562	blood:
10	chr14:35796183..35799251-chr14:35803909..35806605,4	MCF-7	breast:
11	chr14:35759417..35767612-chr14:35799689..35808998,23	MCF-7	breast:
12	chr14:35778351..35785006-chr14:35799640..35807255,11	MCF-7	breast:
13	chr14:35803530..35805976-chr17:57918595..57920950,2	MCF-7	breast:
14	chr14:35716423..35718490-chr14:35802705..35806298,3	MCF-7	breast:
15	chr14:35803405..35806086-chr14:35873118..35875529,3	K562	blood:
16	chr14:35804352..35806289-chr16:30623113..30625899,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000199004	Chromatin interaction
ENSG00000100902	Chromatin interaction
ENSG00000100906	Chromatin interaction
ENSG00000258860	Chromatin interaction
ENSG00000265530	Chromatin interaction
ENSG00000258738	Chromatin interaction
ENSG00000198604	Chromatin interaction
ENSG00000256243	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10130007	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10132938	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10133402	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10134499	1.00[EUR][1000 genomes]
rs10134666	1.00[AMR][1000 genomes]
rs10136494	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10137095	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10137440	0.82[EUR][1000 genomes]
rs10137488	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10140636	0.85[AMR][1000 genomes]
rs10140985	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10141688	1.00[AMR][1000 genomes]
rs10143083	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10146661	1.00[AMR][1000 genomes]
rs10147734	0.94[EUR][1000 genomes]
rs10148143	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10148234	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10148868	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10148872	0.85[AMR][1000 genomes]
rs10149412	1.00[AMR][1000 genomes]
rs10467707	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10715	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11156879	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11156880	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11547365	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11851831	0.85[AMR][1000 genomes]
rs12323542	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13393	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2415281	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28460322	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28625199	1.00[AMR][1000 genomes]
rs55747728	0.85[AMR][1000 genomes]
rs57606486	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58177251	0.85[AMR][1000 genomes]
rs59708026	0.85[AMR][1000 genomes]
rs59954445	0.85[AMR][1000 genomes]
rs60206834	0.85[AMR][1000 genomes]
rs7141690	0.85[AMR][1000 genomes]
rs7145488	0.85[AMR][1000 genomes]
rs7154775	1.00[AMR][1000 genomes]
rs7158592	0.85[AMR][1000 genomes]
rs8004205	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8018707	0.94[EUR][1000 genomes]
rs9322944	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9322945	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9322946	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv456205	chr14:35772940-35826370	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv564318	chr14:35772940-35826370	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv518090	chr14:35802483-35840241	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35784800-35804600	Weak transcription	Ovary	ovary
2	chr14:35784800-35804600	Weak transcription	Psoas Muscle	Psoas
3	chr14:35788000-35804600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:35788600-35805800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:35789000-35804600	Weak transcription	Brain Anterior Caudate	brain
6	chr14:35800000-35815000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr14:35800600-35805000	Enhancers	Fetal Intestine Large	intestine
8	chr14:35800600-35807000	Enhancers	Primary hematopoietic stem cells	blood
9	chr14:35800600-35807200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:35800600-35807400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr14:35800600-35814400	Enhancers	Placenta	Placenta
12	chr14:35800800-35804600	Enhancers	Duodenum Mucosa	Duodenum
13	chr14:35800800-35804600	Enhancers	A549	lung
14	chr14:35800800-35805000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr14:35800800-35806000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:35800800-35806600	Enhancers	Stomach Mucosa	stomach
17	chr14:35800800-35807000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr14:35800800-35812200	Enhancers	Fetal Thymus	thymus
19	chr14:35800800-35813800	Enhancers	Lung	lung
20	chr14:35801000-35805200	Enhancers	Adipose Nuclei	Adipose
21	chr14:35801000-35806000	Enhancers	Fetal Muscle Trunk	muscle
22	chr14:35801000-35810400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:35801200-35807600	Enhancers	Spleen	Spleen
24	chr14:35801400-35805800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr14:35801400-35805800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:35801400-35806200	Weak transcription	NH-A	brain
27	chr14:35801400-35810200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr14:35801800-35804600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:35802000-35805000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr14:35802000-35806000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:35802200-35804600	Weak transcription	NHLF	lung
32	chr14:35802200-35805400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:35802400-35804800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr14:35802400-35805800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:35802600-35804600	Weak transcription	Brain Hippocampus Middle	brain
36	chr14:35802600-35804600	Weak transcription	Fetal Heart	heart
37	chr14:35802600-35805600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr14:35802600-35805800	Weak transcription	HSMMtube	muscle
39	chr14:35802800-35804600	Weak transcription	Small Intestine	intestine
40	chr14:35802800-35805000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:35802800-35805000	Weak transcription	HSMM	muscle
42	chr14:35802800-35806000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr14:35802800-35809000	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr14:35802800-35810200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr14:35803000-35804600	Weak transcription	Fetal Kidney	kidney
46	chr14:35803000-35804600	Weak transcription	Fetal Muscle Leg	muscle
47	chr14:35803000-35804600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr14:35803000-35804600	Enhancers	Hela-S3	cervix
49	chr14:35803000-35804600	Weak transcription	HUVEC	blood vessel
50	chr14:35803000-35804800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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