Variant report

Variant	rs10140636
Chromosome Location	chr14:35749383-35749384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35742696..35750735-chr14:35870363..35874138,7	MCF-7	breast:
2	chr14:35749143..35751383-chr14:35753309..35755474,3	MCF-7	breast:
3	chr14:35022063..35024959-chr14:35748089..35750712,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10130007	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10132938	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10133402	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10134666	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10136494	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10137095	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10137440	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10137488	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10140985	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10141688	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10143083	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10146661	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10147734	0.83[EUR][1000 genomes]
rs10148143	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10148234	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10148868	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10148872	0.89[EUR][1000 genomes]
rs10149412	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10467707	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10715	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11156879	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11156880	0.83[EUR][1000 genomes]
rs11547365	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12323542	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13393	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17458583	0.82[AFR][1000 genomes]
rs2277460	0.82[AFR][1000 genomes]
rs2415281	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28460322	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28461608	0.90[AFR][1000 genomes]
rs28522717	0.90[AFR][1000 genomes]
rs28625199	0.85[AMR][1000 genomes]
rs56762985	0.85[AMR][1000 genomes]
rs57606486	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58058174	0.85[AMR][1000 genomes]
rs7140912	0.90[AFR][1000 genomes]
rs7154775	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8004205	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8014594	0.82[AFR][1000 genomes]
rs8017330	0.90[AFR][1000 genomes]
rs8018707	0.83[EUR][1000 genomes]
rs9322944	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9322945	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9322946	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv1044515	chr14:35510785-35756317	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
8	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
9	nsv1038396	chr14:35714499-35788189	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv1045288	chr14:35735886-35788189	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1043840	chr14:35739319-35791879	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35684600-35760800	Weak transcription	HSMM	muscle
2	chr14:35705400-35749800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:35706800-35760800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:35709800-35753600	Weak transcription	Small Intestine	intestine
5	chr14:35716800-35760600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:35716800-35761000	Weak transcription	Spleen	Spleen
7	chr14:35717000-35760800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr14:35717600-35753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr14:35722000-35754000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr14:35722000-35760800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:35724200-35756400	Weak transcription	Left Ventricle	heart
12	chr14:35727200-35754600	Weak transcription	NHDF-Ad	bronchial
13	chr14:35727200-35756400	Weak transcription	Stomach Mucosa	stomach
14	chr14:35727200-35761000	Weak transcription	NHLF	lung
15	chr14:35727400-35754000	Weak transcription	HUVEC	blood vessel
16	chr14:35728000-35750200	Weak transcription	Ovary	ovary
17	chr14:35728400-35754600	Weak transcription	K562	blood
18	chr14:35728400-35755000	Weak transcription	Colonic Mucosa	Colon
19	chr14:35730000-35751000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:35730200-35760600	Weak transcription	Fetal Brain Female	brain
21	chr14:35730400-35753400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr14:35731800-35756000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:35734400-35760600	Weak transcription	Right Ventricle	heart
24	chr14:35734400-35760800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr14:35734600-35749400	Weak transcription	Fetal Kidney	kidney
26	chr14:35734600-35750400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr14:35734600-35752400	Weak transcription	NH-A	brain
28	chr14:35736000-35760800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:35736600-35754000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr14:35737400-35761000	Weak transcription	Gastric	stomach
31	chr14:35737600-35751800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:35738600-35750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:35738800-35759400	Weak transcription	Placenta	Placenta
34	chr14:35740000-35753600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr14:35740000-35754800	Weak transcription	Adipose Nuclei	Adipose
36	chr14:35740000-35756600	Weak transcription	NHEK	skin
37	chr14:35741000-35751600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr14:35741200-35760800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:35742800-35755800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr14:35743200-35756400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr14:35743400-35750000	Weak transcription	GM12878-XiMat	blood
42	chr14:35743400-35760800	Weak transcription	HMEC	breast
43	chr14:35743600-35753200	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr14:35743600-35754600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr14:35743600-35760800	Weak transcription	Brain Anterior Caudate	brain
46	chr14:35743800-35751800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr14:35743800-35753600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr14:35743800-35760800	Weak transcription	Osteobl	bone
49	chr14:35744000-35754800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr14:35744000-35756200	Weak transcription	Liver	Liver

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