Variant report

Variant	rs56762985
Chromosome Location	chr14:35570402-35570403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35568810..35572401-chr14:35587846..35592624,4	MCF-7	breast:
2	chr14:35568012..35571090-chr14:35873276..35876327,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-173D9.3.1-1	chr14:35568882-35571935	ENSG00000247658

Variant related genes	Relation type
ENSG00000100890	Chromatin interaction
ENSG00000100906	Chromatin interaction
ENSG00000092020	Chromatin interaction
ENSG00000258790	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10130007	1.00[AMR][1000 genomes]
rs10132938	1.00[AMR][1000 genomes]
rs10134666	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10140636	0.85[AMR][1000 genomes]
rs10140985	1.00[AMR][1000 genomes]
rs10141688	1.00[AMR][1000 genomes]
rs10146661	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10148143	1.00[AMR][1000 genomes]
rs10148868	1.00[AMR][1000 genomes]
rs10148872	0.85[AMR][1000 genomes]
rs10149412	1.00[AMR][1000 genomes]
rs10715	1.00[AMR][1000 genomes]
rs11156873	0.90[EUR][1000 genomes]
rs11547365	1.00[AMR][1000 genomes]
rs11851831	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12323542	1.00[AMR][1000 genomes]
rs2415281	1.00[AMR][1000 genomes]
rs28403535	0.90[EUR][1000 genomes]
rs28460322	1.00[AMR][1000 genomes]
rs28625199	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs45447399	0.86[EUR][1000 genomes]
rs55747728	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58177251	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59708026	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59954445	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60206834	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7141690	0.85[AMR][1000 genomes]
rs7145488	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7154775	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7158592	0.85[AMR][1000 genomes]
rs8004205	1.00[AMR][1000 genomes]
rs9322944	1.00[AMR][1000 genomes]
rs9652275	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901602	chr14:35367889-35571651	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv901608	chr14:35449467-35571651	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv901609	chr14:35449467-35587767	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv901612	chr14:35470049-35571651	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv901613	chr14:35470049-35587767	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv564264	chr14:35482797-35732369	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv901614	chr14:35485748-35571651	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv901615	chr14:35485748-35630175	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
12	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv1052800	chr14:35509858-35607117	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
14	nsv1044515	chr14:35510785-35756317	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
15	nsv564265	chr14:35512335-35624831	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
16	nsv1046992	chr14:35527239-35724227	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	nsv1051274	chr14:35529529-35724227	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
18	nsv1048823	chr14:35537281-35724892	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
19	nsv542032	chr14:35537281-35724892	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
20	nsv1040540	chr14:35537481-35724753	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
21	nsv542033	chr14:35537481-35724753	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
22	nsv1042625	chr14:35546094-35680358	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
23	nsv1050123	chr14:35546114-35724892	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
24	nsv542034	chr14:35546114-35724892	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
25	nsv1050700	chr14:35548276-35639084	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
26	nsv1043692	chr14:35548276-35720016	Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
27	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
28	nsv542035	chr14:35563220-35607117	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
29	nsv1047992	chr14:35563220-35639084	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
30	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
31	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35517400-35578800	Weak transcription	Stomach Mucosa	stomach
2	chr14:35529400-35590200	Weak transcription	Esophagus	oesophagus
3	chr14:35530600-35590000	Weak transcription	Fetal Heart	heart
4	chr14:35538200-35581000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:35542000-35589600	Weak transcription	Fetal Brain Male	brain
6	chr14:35543200-35580800	Weak transcription	K562	blood
7	chr14:35545600-35580800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:35545600-35582800	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr14:35545600-35590000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:35546000-35581200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr14:35546000-35585800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr14:35546000-35587200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr14:35546200-35585000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:35546800-35571800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:35547000-35580800	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr14:35547200-35574400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr14:35547200-35577600	Strong transcription	Placenta	Placenta
18	chr14:35547400-35574000	Strong transcription	Adipose Nuclei	Adipose
19	chr14:35547400-35577800	Strong transcription	Primary B cells from peripheral blood	blood
20	chr14:35547400-35580600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr14:35548000-35581000	Strong transcription	HepG2	liver
22	chr14:35548200-35580800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:35548400-35578800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:35550200-35586000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr14:35550800-35581000	Strong transcription	Dnd41	blood
26	chr14:35551000-35572800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr14:35551600-35579400	Weak transcription	NHEK	skin
28	chr14:35552000-35586600	Strong transcription	Fetal Thymus	thymus
29	chr14:35552600-35577600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr14:35553000-35570600	Strong transcription	Fetal Intestine Large	intestine
31	chr14:35553400-35589800	Weak transcription	Pancreas	Pancrea
32	chr14:35555000-35576000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr14:35555000-35581200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr14:35555400-35578800	Weak transcription	HMEC	breast
35	chr14:35556200-35578800	Weak transcription	Aorta	Aorta
36	chr14:35557000-35578200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:35558400-35570600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr14:35558600-35576200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr14:35560200-35581200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:35560600-35576400	Weak transcription	A549	lung
41	chr14:35560600-35580600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:35560600-35580600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:35560800-35572600	Strong transcription	Fetal Muscle Leg	muscle
44	chr14:35561800-35579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr14:35562400-35571000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr14:35563200-35573000	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr14:35564200-35578600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:35564200-35589400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:35564400-35572000	Weak transcription	Psoas Muscle	Psoas
50	chr14:35564400-35578800	Weak transcription	Fetal Kidney	kidney

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