Variant report

Variant	rs58063220
Chromosome Location	chr3:68103757-68103758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1351957	1.00[AMR][1000 genomes]
rs17140939	1.00[AMR][1000 genomes]
rs17140941	1.00[AMR][1000 genomes]
rs17140947	1.00[AMR][1000 genomes]
rs17140948	1.00[AMR][1000 genomes]
rs55780642	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57457619	1.00[AMR][1000 genomes]
rs59728287	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60547129	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61737909	1.00[AMR][1000 genomes]
rs61739210	1.00[AMR][1000 genomes]
rs72626932	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834808	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73834809	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73834814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73834815	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73834816	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73834820	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73834821	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73834822	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73834823	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73834824	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73834825	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73834826	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73834828	1.00[AMR][1000 genomes]
rs73834833	1.00[AMR][1000 genomes]
rs73834835	1.00[AMR][1000 genomes]
rs73834837	1.00[AMR][1000 genomes]
rs73834838	1.00[AMR][1000 genomes]
rs73834839	1.00[AMR][1000 genomes]
rs73834844	1.00[AMR][1000 genomes]
rs73834845	1.00[AMR][1000 genomes]
rs73834846	1.00[AMR][1000 genomes]
rs73834847	1.00[AMR][1000 genomes]
rs73834852	1.00[AMR][1000 genomes]
rs73837231	1.00[AMR][1000 genomes]
rs73837233	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837236	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837237	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837249	1.00[AMR][1000 genomes]
rs73837250	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837263	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73837267	0.90[AFR][1000 genomes]
rs73837269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73837270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7426725	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7433199	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1010231	chr3:67894825-68117879	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv999747	chr3:68066423-68188180	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv536584	chr3:68066423-68188180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68098000-68105000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr3:68099600-68105800	Weak transcription	Small Intestine	intestine
3	chr3:68099800-68105000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:68101800-68103800	Weak transcription	Fetal Intestine Small	intestine
5	chr3:68103600-68105400	Enhancers	Fetal Intestine Large	intestine

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