Variant report

Variant	rs73834839
Chromosome Location	chr3:68183462-68183463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1351957	1.00[AMR][1000 genomes]
rs17140939	1.00[AMR][1000 genomes]
rs17140941	1.00[AMR][1000 genomes]
rs17140947	1.00[AMR][1000 genomes]
rs17140948	1.00[AMR][1000 genomes]
rs55780642	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57457619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58063220	1.00[AMR][1000 genomes]
rs59728287	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60547129	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61737909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61739210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72626932	1.00[AMR][1000 genomes]
rs73834808	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834809	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834814	1.00[AMR][1000 genomes]
rs73834815	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834816	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834820	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834821	0.93[AMR][1000 genomes]
rs73834822	1.00[AMR][1000 genomes]
rs73834823	1.00[AMR][1000 genomes]
rs73834824	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834825	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834826	1.00[AMR][1000 genomes]
rs73834828	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73834833	1.00[AMR][1000 genomes]
rs73834835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834838	1.00[AMR][1000 genomes]
rs73834844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834847	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73834852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73837231	1.00[AMR][1000 genomes]
rs73837233	1.00[AMR][1000 genomes]
rs73837236	1.00[AMR][1000 genomes]
rs73837237	1.00[AMR][1000 genomes]
rs73837249	1.00[AMR][1000 genomes]
rs73837250	1.00[AMR][1000 genomes]
rs73837251	1.00[AMR][1000 genomes]
rs73837263	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73837269	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73837270	1.00[AMR][1000 genomes]
rs7426725	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7433199	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999747	chr3:68066423-68188180	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536584	chr3:68066423-68188180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv876925	chr3:68180422-68288626	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68174400-68184200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:68178600-68184000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:68180800-68185400	Weak transcription	Fetal Brain Female	brain
4	chr3:68183200-68183800	Enhancers	Fetal Brain Male	brain
5	chr3:68183400-68183600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:68183400-68184600	Enhancers	Fetal Lung	lung

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