Variant report

Variant	rs59728287
Chromosome Location	chr3:68137554-68137555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1351957	0.81[AMR][1000 genomes]
rs17140939	0.81[AMR][1000 genomes]
rs17140941	0.81[AMR][1000 genomes]
rs17140947	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17140948	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55780642	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57457619	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58063220	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60547129	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61737909	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61739210	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72626932	0.81[AMR][1000 genomes]
rs73834808	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834809	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834814	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73834815	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834816	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834820	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834821	0.90[EUR][1000 genomes]
rs73834822	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73834823	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73834824	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834825	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834826	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73834828	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73834833	0.81[AMR][1000 genomes]
rs73834835	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834837	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834838	0.81[AMR][1000 genomes]
rs73834839	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834844	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834845	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834846	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834847	0.81[AMR][1000 genomes]
rs73834852	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73837231	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73837233	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73837236	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73837237	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73837249	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73837250	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73837251	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73837263	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73837269	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73837270	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7426725	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7433199	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999747	chr3:68066423-68188180	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536584	chr3:68066423-68188180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68134200-68140400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:68134400-68140200	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr3:68134400-68140400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:68134400-68140400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:68134400-68141000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr3:68134600-68140400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr3:68134600-68141000	Enhancers	Primary T cells from cord blood	blood
8	chr3:68135000-68140400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:68135200-68137600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr3:68136000-68140000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:68137000-68138000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr3:68137000-68140200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:68137200-68137800	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:68137200-68137800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr3:68137400-68140000	Enhancers	Fetal Stomach	stomach

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