Variant report

Variant	rs58064325
Chromosome Location	chr4:110581089-110581090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13152659	1.00[AMR][1000 genomes]
rs17040722	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2158205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4698791	1.00[AMR][1000 genomes]
rs4698793	1.00[AMR][1000 genomes]
rs5030607	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60211464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61490251	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61735996	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6533454	1.00[AMR][1000 genomes]
rs6533466	1.00[AMR][1000 genomes]
rs6850937	1.00[AMR][1000 genomes]
rs6851274	1.00[AMR][1000 genomes]
rs72674844	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7442505	1.00[AMR][1000 genomes]
rs7675451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv508303	chr4:110579305-110604452	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110570400-110582000	Weak transcription	HSMM	muscle
2	chr4:110571000-110605400	Weak transcription	Left Ventricle	heart
3	chr4:110572600-110623200	Weak transcription	Esophagus	oesophagus
4	chr4:110573200-110588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:110574000-110586600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:110574200-110583200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:110574200-110583200	Weak transcription	Dnd41	blood
8	chr4:110574200-110587400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:110574200-110587600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:110574200-110592600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:110574200-110598400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr4:110574400-110581400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:110574600-110584800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:110574800-110581200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:110574800-110585000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:110576600-110589200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:110576800-110585000	Weak transcription	Primary B cells from cord blood	blood
18	chr4:110577000-110583200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:110577200-110582800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:110577400-110587000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr4:110579200-110608400	Weak transcription	Ovary	ovary
22	chr4:110579400-110581600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr4:110579400-110582600	Weak transcription	HepG2	liver
24	chr4:110580000-110583800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:110580000-110585000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr4:110580000-110587600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr4:110580200-110583200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:110580200-110584400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:110580200-110588200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr4:110580400-110581200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr4:110580400-110583200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr4:110580400-110583600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:110580400-110586000	Strong transcription	Fetal Thymus	thymus
34	chr4:110580600-110581200	Strong transcription	Primary T cells from cord blood	blood
35	chr4:110580600-110583200	Weak transcription	Colonic Mucosa	Colon
36	chr4:110580600-110585000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr4:110580600-110585400	Strong transcription	Thymus	Thymus
38	chr4:110580800-110583600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr4:110580800-110583600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr4:110580800-110583600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr4:110580800-110584600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr4:110580800-110585000	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr4:110580800-110586200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr4:110581000-110583000	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:110581000-110586200	Strong transcription	Primary B cells from peripheral blood	blood

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