Variant report

Variant	rs61735996
Chromosome Location	chr4:110595005-110595006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEC24B-2	chr4:110594999-110595280	NONHSAT097790

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13152659	1.00[AMR][1000 genomes]
rs17040722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2158205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4698791	1.00[AMR][1000 genomes]
rs4698793	1.00[AMR][1000 genomes]
rs5030607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58064325	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60211464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61490251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6533454	1.00[AMR][1000 genomes]
rs6533466	1.00[AMR][1000 genomes]
rs6850937	1.00[AMR][1000 genomes]
rs6851274	1.00[AMR][1000 genomes]
rs72674844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7442505	1.00[AMR][1000 genomes]
rs7675451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv508303	chr4:110579305-110604452	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv967784	chr4:110594675-110601981	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110571000-110605400	Weak transcription	Left Ventricle	heart
2	chr4:110572600-110623200	Weak transcription	Esophagus	oesophagus
3	chr4:110574200-110598400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:110579200-110608400	Weak transcription	Ovary	ovary
5	chr4:110581600-110596800	Weak transcription	Lung	lung
6	chr4:110583000-110596600	Weak transcription	HepG2	liver
7	chr4:110583600-110605600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:110584200-110606000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:110584400-110608800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:110585200-110596800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:110585200-110599600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:110585800-110608800	Weak transcription	Adipose Nuclei	Adipose
13	chr4:110586000-110599800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:110586000-110605200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:110589600-110623200	Weak transcription	Brain Substantia Nigra	brain
16	chr4:110590200-110602600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:110590600-110606000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr4:110591200-110602600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:110591200-110608600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr4:110591600-110605000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr4:110592000-110611600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:110592200-110599600	Weak transcription	Thymus	Thymus
23	chr4:110592600-110596400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr4:110592800-110603800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:110593000-110596200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr4:110593000-110596800	Strong transcription	Dnd41	blood
27	chr4:110593000-110598400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr4:110593000-110600000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:110593000-110601400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr4:110593000-110608200	Weak transcription	Fetal Lung	lung
31	chr4:110593200-110596200	Weak transcription	GM12878-XiMat	blood
32	chr4:110593200-110596600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr4:110593200-110597000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr4:110593200-110600200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:110593800-110611600	Weak transcription	K562	blood
36	chr4:110594200-110597000	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr4:110594200-110601800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr4:110594400-110595200	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr4:110594400-110595200	Strong transcription	Fetal Thymus	thymus
40	chr4:110594400-110599000	Strong transcription	Primary T cells from cord blood	blood
41	chr4:110594600-110595200	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr4:110594800-110597600	Weak transcription	Primary B cells from cord blood	blood
43	chr4:110594800-110598600	Weak transcription	Monocytes-CD14+_RO01746	blood

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