Variant report

Variant	rs58071741
Chromosome Location	chr4:27117876-27117877
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16878849	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878852	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878854	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17572822	0.90[EUR][1000 genomes]
rs56077414	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56105534	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56159027	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73251795	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73251802	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73253660	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73253664	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73253667	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253668	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999134	chr4:27115301-27270500	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27116200-27118000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:27117400-27122800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:27117400-27123600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:27117600-27122600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:27117600-27122800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:27117600-27122800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:27117600-27122800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:27117800-27122800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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