Variant report

Variant	rs56159027
Chromosome Location	chr4:27102115-27102116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16878830	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16878849	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16878852	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16878854	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17572822	0.97[EUR][1000 genomes]
rs56077414	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56105534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58071741	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73251795	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73251799	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73251800	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73251801	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73251802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73253664	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73253667	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73253668	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv436429	chr4:27096917-27103731	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27091000-27104200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:27095000-27102800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:27097200-27102400	Weak transcription	Gastric	stomach
4	chr4:27097800-27102400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:27098000-27102400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:27099200-27102400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:27099200-27103000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:27099400-27103200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:27099600-27102200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:27099600-27102800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:27099800-27102400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:27101400-27102600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:27102000-27102200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:27102000-27102400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:27102000-27102400	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
16	chr4:27102000-27102400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:27102000-27102400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:27102000-27102800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:27102000-27104000	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links