Variant report

Variant	rs73251795
Chromosome Location	chr4:27087762-27087763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16878830	0.80[EUR][1000 genomes]
rs16878849	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16878852	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16878854	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17572822	0.93[EUR][1000 genomes]
rs56077414	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56105534	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56159027	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58071741	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73251799	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73251800	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73251801	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73251802	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73253660	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73253664	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73253667	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73253668	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4279	chr4:27056372-27101774	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27086800-27089400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:27086800-27089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:27087000-27088000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:27087200-27087800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:27087200-27087800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr4:27087200-27087800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
7	chr4:27087200-27088200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:27087200-27090000	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:27087200-27092800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:27087400-27087800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:27087400-27087800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:27087400-27089000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:27087400-27091000	Weak transcription	Lung	lung
14	chr4:27087400-27095800	Weak transcription	Pancreas	Pancrea
15	chr4:27087600-27089000	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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