Variant report

Variant	rs73251800
Chromosome Location	chr4:27099296-27099297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:27052031..27054085-chr4:27099208..27101955,2	MCF-7	breast:
2	chr4:27098348..27100200-chr4:27101812..27104564,2	MCF-7	breast:
3	chr4:27093420..27095634-chr4:27097960..27100071,2	K562	blood:
4	chr4:27098137..27101120-chr4:27101208..27104613,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16878830	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16878849	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16878852	0.84[EUR][1000 genomes]
rs16878854	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17572822	0.82[EUR][1000 genomes]
rs56077414	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56105534	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56159027	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73251795	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73251799	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73251801	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73251802	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73253660	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73253664	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73253667	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73253668	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4279	chr4:27056372-27101774	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv436429	chr4:27096917-27103731	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27091000-27104200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:27092000-27100800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:27095000-27102800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:27096000-27099400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:27096200-27099400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:27096400-27099600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:27096400-27100000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:27096600-27099600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:27097000-27099800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:27097200-27102400	Weak transcription	Gastric	stomach
11	chr4:27097400-27099600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr4:27097400-27102000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:27097600-27099400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr4:27097800-27099600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:27097800-27102400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr4:27098000-27102400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:27098800-27099600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:27098800-27101800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:27099200-27102400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:27099200-27103000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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