Variant report

Variant	rs58087393
Chromosome Location	chr15:59810269-59810270
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11856047	0.84[EUR][1000 genomes]
rs11856481	0.87[EUR][1000 genomes]
rs11857239	0.83[EUR][1000 genomes]
rs11858284	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57767828	0.81[ASN][1000 genomes]
rs59266497	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71119480	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7161900	0.83[EUR][1000 genomes]
rs73417089	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73418913	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8036164	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59807000-59818000	Enhancers	Primary B cells from peripheral blood	blood
2	chr15:59807200-59816600	Enhancers	Primary B cells from cord blood	blood
3	chr15:59807600-59812200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:59808000-59817600	Weak transcription	Fetal Brain Female	brain
5	chr15:59809200-59814600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:59809400-59813400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:59809400-59813600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:59809600-59810400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr15:59810000-59811600	Enhancers	GM12878-XiMat	blood
10	chr15:59810200-59810600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:59810200-59810800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:59810200-59810800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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