Variant report

Variant	rs11856481
Chromosome Location	chr15:59816262-59816263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59815837..59817433-chr15:59923383..59925258,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11853300	0.86[EUR][1000 genomes]
rs11853709	1.00[CEU][hapmap]
rs11853900	0.88[ASN][1000 genomes]
rs11853953	0.88[ASN][1000 genomes]
rs11856047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11857239	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857953	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.88[ASN][1000 genomes]
rs11858284	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16941441	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs16941446	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.88[ASN][1000 genomes]
rs16941448	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.88[ASN][1000 genomes]
rs16941450	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs4597258	1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.88[ASN][1000 genomes]
rs56327354	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57391884	0.88[ASN][1000 genomes]
rs57767828	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58087393	0.87[EUR][1000 genomes]
rs58433957	0.88[ASN][1000 genomes]
rs59266497	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71119480	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7161900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73417042	0.88[ASN][1000 genomes]
rs73417089	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73418913	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8028232	0.88[ASN][1000 genomes]
rs8028330	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs8029395	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs8036164	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59807000-59818000	Enhancers	Primary B cells from peripheral blood	blood
2	chr15:59807200-59816600	Enhancers	Primary B cells from cord blood	blood
3	chr15:59808000-59817600	Weak transcription	Fetal Brain Female	brain
4	chr15:59812600-59818000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:59814400-59816400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr15:59814400-59817400	Enhancers	Primary hematopoietic stem cells	blood
7	chr15:59814400-59817800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr15:59814600-59816600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:59814600-59817200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr15:59814600-59817200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr15:59814800-59816600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:59814800-59817000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr15:59814800-59817200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:59815000-59816800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:59815000-59817000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:59815200-59817000	Bivalent Enhancer	Fetal Thymus	thymus
17	chr15:59815200-59817200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr15:59815200-59817600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr15:59815400-59816600	Enhancers	Spleen	Spleen
20	chr15:59815400-59817000	Enhancers	GM12878-XiMat	blood
21	chr15:59815400-59817600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:59815400-59817800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr15:59815600-59816400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:59815600-59817000	Weak transcription	Esophagus	oesophagus
25	chr15:59815800-59816400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:59815800-59816600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:59816000-59816400	Bivalent Enhancer	HepG2	liver
28	chr15:59816000-59818000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr15:59816200-59816400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:59816200-59816400	Flanking Active TSS	Primary T cells from cord blood	blood
31	chr15:59816200-59816600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:59816200-59816800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:59816200-59817200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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