Variant report
| Variant | rs73417089 |
|---|---|
| Chromosome Location | chr15:59799038-59799039 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
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rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11853300 | 0.86[EUR][1000 genomes] |
| rs11853900 | 0.88[ASN][1000 genomes] |
| rs11853953 | 0.88[ASN][1000 genomes] |
| rs11856047 | 0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11856481 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11857239 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11857953 | 0.88[ASN][1000 genomes] |
| rs11858284 | 0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs16941441 | 0.88[ASN][1000 genomes] |
| rs16941446 | 0.88[ASN][1000 genomes] |
| rs16941448 | 0.88[ASN][1000 genomes] |
| rs16941450 | 0.88[ASN][1000 genomes] |
| rs4597258 | 0.88[ASN][1000 genomes] |
| rs56327354 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs57391884 | 0.88[ASN][1000 genomes] |
| rs57767828 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs58087393 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs58433957 | 0.88[ASN][1000 genomes] |
| rs59266497 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs71119480 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7161900 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73417042 | 0.88[ASN][1000 genomes] |
| rs73418913 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8028232 | 0.88[ASN][1000 genomes] |
| rs8029395 | 0.88[ASN][1000 genomes] |
| rs8036164 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527307 | chr15:59103328-60018487 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 145 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044442 | chr15:59765724-59955587 | Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv542403 | chr15:59765724-59955587 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv904279 | chr15:59791666-59842927 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:59798600-59800600 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr15:59798800-59799400 | Enhancers | Brain Substantia Nigra | brain |
| 3 | chr15:59798800-59802200 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
