Variant report

Variant	rs58118499
Chromosome Location	chr6:24406105-24406106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24400759..24404961-chr6:24405497..24410292,7	MCF-7	breast:
2	chr6:24282520..24284715-chr6:24405070..24407671,2	MCF-7	breast:
3	chr6:24404630..24407333-chr6:24559685..24561436,2	K562	blood:
4	chr6:24400786..24404823-chr6:24404929..24410869,7	K562	blood:

Variant related genes	Relation type
ENSG00000124532	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57322986	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394039	1.00[EUR][1000 genomes]
rs73394050	1.00[EUR][1000 genomes]
rs73725407	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73725408	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73727536	1.00[EUR][1000 genomes]
rs73727537	1.00[EUR][1000 genomes]
rs73727538	1.00[EUR][1000 genomes]
rs73727541	1.00[EUR][1000 genomes]
rs73727546	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24402400-24406600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr6:24404000-24406600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24404000-24408000	Weak transcription	Aorta	Aorta
4	chr6:24404000-24408000	Weak transcription	Lung	lung
5	chr6:24404000-24408000	Weak transcription	Spleen	Spleen
6	chr6:24404000-24408800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:24404000-24413000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:24404200-24413000	Weak transcription	Gastric	stomach
9	chr6:24404400-24407600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:24404400-24412000	Weak transcription	Colonic Mucosa	Colon
11	chr6:24404400-24412400	Weak transcription	Fetal Brain Male	brain
12	chr6:24404400-24412800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:24404400-24412800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:24404400-24413000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:24404600-24407600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:24404600-24407600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:24404600-24407600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:24404600-24407600	Weak transcription	Brain Angular Gyrus	brain
19	chr6:24404600-24407600	Weak transcription	Placenta	Placenta
20	chr6:24404600-24407800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:24404600-24407800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:24404600-24407800	Weak transcription	HSMMtube	muscle
23	chr6:24404600-24407800	Weak transcription	NHLF	lung
24	chr6:24404600-24408000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:24404600-24408000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:24404600-24408000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:24404600-24408000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:24404600-24408000	Weak transcription	Left Ventricle	heart
29	chr6:24404600-24408000	Weak transcription	Ovary	ovary
30	chr6:24404600-24408000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:24404600-24408800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:24404600-24408800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:24404600-24408800	Weak transcription	NHDF-Ad	bronchial
34	chr6:24404600-24412400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:24404600-24412600	Weak transcription	Brain Substantia Nigra	brain
36	chr6:24404600-24412600	Weak transcription	Stomach Mucosa	stomach
37	chr6:24404600-24412600	Weak transcription	Thymus	Thymus
38	chr6:24404600-24413000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:24404600-24413000	Weak transcription	Small Intestine	intestine
40	chr6:24404600-24413600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:24404600-24437400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:24404800-24406400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:24404800-24407400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:24404800-24407600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:24404800-24407600	Weak transcription	Adipose Nuclei	Adipose
46	chr6:24404800-24408000	Weak transcription	HUVEC	blood vessel
47	chr6:24404800-24408200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:24404800-24408600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:24404800-24412400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:24405000-24407600	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links