Variant report

Variant	rs73727546
Chromosome Location	chr6:24403841-24403842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24402909..24405943-chr6:24492830..24496087,3	K562	blood:
2	chr6:24401784..24404907-chr6:24494976..24497958,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112294	Chromatin interaction
ENSG00000112293	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57322986	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58118499	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394039	1.00[EUR][1000 genomes]
rs73394050	1.00[EUR][1000 genomes]
rs73725407	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73725408	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73727536	1.00[EUR][1000 genomes]
rs73727537	1.00[EUR][1000 genomes]
rs73727538	1.00[EUR][1000 genomes]
rs73727541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24401800-24405400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:24402400-24406600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr6:24402600-24404000	Active TSS	Brain Angular Gyrus	brain
4	chr6:24402600-24404000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr6:24402600-24404000	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr6:24402600-24404200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr6:24402600-24404200	Active TSS	Brain Substantia Nigra	brain
8	chr6:24402600-24404200	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:24402600-24404400	Active TSS	Brain Cingulate Gyrus	brain
10	chr6:24402600-24404400	Active TSS	A549	lung
11	chr6:24402600-24404600	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr6:24402600-24404600	Active TSS	Rectal Smooth Muscle	rectum
13	chr6:24402600-24404600	Active TSS	Stomach Smooth Muscle	stomach
14	chr6:24402600-24404800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:24402600-24405000	Active TSS	H1 Cell Line	embryonic stem cell
16	chr6:24402600-24405200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:24402600-24405400	Active TSS	H9 Cell Line	embryonic stem cell
18	chr6:24402600-24405600	Active TSS	GM12878-XiMat	blood
19	chr6:24402800-24404000	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr6:24402800-24404000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr6:24402800-24404000	Active TSS	Lung	lung
22	chr6:24402800-24404000	Active TSS	Hela-S3	cervix
23	chr6:24402800-24404200	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr6:24402800-24404200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:24402800-24404200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:24402800-24404200	Active TSS	HSMM	muscle
27	chr6:24402800-24404400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:24402800-24404400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:24402800-24404400	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr6:24402800-24404400	Active TSS	Fetal Intestine Small	intestine
31	chr6:24402800-24404400	Active TSS	Left Ventricle	heart
32	chr6:24402800-24404600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:24402800-24404600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:24402800-24404600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:24402800-24404600	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr6:24402800-24404600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:24402800-24404600	Active TSS	Colon Smooth Muscle	Colon
38	chr6:24402800-24404600	Active TSS	Psoas Muscle	Psoas
39	chr6:24402800-24404600	Active TSS	Right Atrium	heart
40	chr6:24402800-24404600	Active TSS	Right Ventricle	heart
41	chr6:24402800-24404600	Active TSS	HSMMtube	muscle
42	chr6:24402800-24404600	Active TSS	NHLF	lung
43	chr6:24402800-24405400	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr6:24402800-24405400	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr6:24402800-24405800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:24403000-24404000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:24403000-24404000	Active TSS	Brain Anterior Caudate	brain
48	chr6:24403000-24404000	Active TSS	Esophagus	oesophagus
49	chr6:24403000-24404000	Active TSS	Fetal Heart	heart
50	chr6:24403000-24404000	Active TSS	Fetal Kidney	kidney

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