Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10085174	1.00[EUR][1000 genomes]
rs11963333	1.00[EUR][1000 genomes]
rs11963385	1.00[EUR][1000 genomes]
rs11964299	1.00[EUR][1000 genomes]
rs2005511	1.00[EUR][1000 genomes]
rs57322986	1.00[EUR][1000 genomes]
rs57920151	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58118499	1.00[EUR][1000 genomes]
rs59166698	1.00[EUR][1000 genomes]
rs73382219	1.00[AMR][1000 genomes]
rs73382241	1.00[AMR][1000 genomes]
rs73382246	1.00[AMR][1000 genomes]
rs73389789	1.00[EUR][1000 genomes]
rs73391913	1.00[EUR][1000 genomes]
rs73391954	1.00[EUR][1000 genomes]
rs73391991	1.00[EUR][1000 genomes]
rs73394050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73725407	1.00[EUR][1000 genomes]
rs73725408	1.00[EUR][1000 genomes]
rs73727536	1.00[EUR][1000 genomes]
rs73727537	1.00[EUR][1000 genomes]
rs73727538	1.00[EUR][1000 genomes]
rs73727541	1.00[EUR][1000 genomes]
rs73727546	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24228800-24245600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24241200-24250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:24241600-24245000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:24242600-24245000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:24242600-24245600	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:24242800-24244600	Strong transcription	HepG2	liver
8	chr6:24242800-24245400	Enhancers	Pancreas	Pancrea
9	chr6:24243600-24245800	Enhancers	Colon Smooth Muscle	Colon
10	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney

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