Variant report

Variant	rs10085174
Chromosome Location	chr6:24181051-24181052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11963333	1.00[EUR][1000 genomes]
rs11963385	1.00[EUR][1000 genomes]
rs11964299	1.00[EUR][1000 genomes]
rs2005511	1.00[EUR][1000 genomes]
rs57920151	1.00[EUR][1000 genomes]
rs59166698	1.00[EUR][1000 genomes]
rs6933799	1.00[EUR][1000 genomes]
rs73389789	1.00[EUR][1000 genomes]
rs73391913	1.00[EUR][1000 genomes]
rs73391954	1.00[EUR][1000 genomes]
rs73391991	1.00[EUR][1000 genomes]
rs73394039	1.00[EUR][1000 genomes]
rs73394050	1.00[EUR][1000 genomes]
rs73727536	1.00[EUR][1000 genomes]
rs73727537	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1798372	chr6:24158542-24181477	Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24153800-24200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24164400-24183800	Weak transcription	Pancreas	Pancrea
3	chr6:24171600-24182800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:24172800-24194800	Weak transcription	Fetal Intestine Large	intestine
5	chr6:24177800-24198400	Weak transcription	A549	lung
6	chr6:24179600-24181400	Weak transcription	Fetal Kidney	kidney
7	chr6:24179600-24181400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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