Variant report

Variant	rs73391991
Chromosome Location	chr6:24210676-24210677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10085174	1.00[EUR][1000 genomes]
rs11963333	1.00[EUR][1000 genomes]
rs11963385	1.00[EUR][1000 genomes]
rs11964299	1.00[EUR][1000 genomes]
rs2005511	1.00[EUR][1000 genomes]
rs57920151	1.00[EUR][1000 genomes]
rs59166698	1.00[EUR][1000 genomes]
rs6933799	1.00[EUR][1000 genomes]
rs73389789	1.00[EUR][1000 genomes]
rs73391913	1.00[EUR][1000 genomes]
rs73391954	1.00[EUR][1000 genomes]
rs73394039	1.00[EUR][1000 genomes]
rs73394050	1.00[EUR][1000 genomes]
rs73727536	1.00[EUR][1000 genomes]
rs73727537	1.00[EUR][1000 genomes]
rs73727538	1.00[EUR][1000 genomes]
rs73727541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
2	chr6:24206200-24231400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24206800-24227600	Weak transcription	Fetal Kidney	kidney
4	chr6:24208400-24212800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:24210400-24215400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:24210600-24212800	Strong transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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