Variant report

Variant	rs57920151
Chromosome Location	chr6:24146238-24146239
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10085174	1.00[EUR][1000 genomes]
rs11963333	1.00[EUR][1000 genomes]
rs11963385	1.00[EUR][1000 genomes]
rs11964299	1.00[EUR][1000 genomes]
rs2005511	1.00[EUR][1000 genomes]
rs59166698	1.00[EUR][1000 genomes]
rs6933799	1.00[EUR][1000 genomes]
rs73389789	1.00[EUR][1000 genomes]
rs73391913	1.00[EUR][1000 genomes]
rs73391954	1.00[EUR][1000 genomes]
rs73391991	1.00[EUR][1000 genomes]
rs73394039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3367849	chr6:24144473-24146521	Enhancers Weak transcription Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24127600-24146800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:24142000-24148000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:24142000-24149800	Weak transcription	Fetal Brain Male	brain
4	chr6:24142200-24147800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:24144800-24148400	Weak transcription	Fetal Brain Female	brain
6	chr6:24145600-24146400	Flanking Active TSS	HepG2	liver
7	chr6:24145600-24146600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:24145600-24149600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:24145800-24146400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:24145800-24146400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:24145800-24146600	Enhancers	Brain Anterior Caudate	brain
12	chr6:24145800-24149400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:24145800-24149800	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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